Wall clock time and date at job start Mon Mar 30 2020 03:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38123 * 119.97736 * 2 1 4 4 C 1.38598 * 120.14264 * 180.22210 * 3 2 1 5 5 C 1.39406 * 119.97179 * 359.55312 * 4 3 2 6 6 C 1.38359 * 119.91842 * 0.22565 * 5 4 3 7 7 C 1.39046 * 119.97678 * 179.77234 * 2 1 3 8 8 N 1.39389 * 120.01758 * 0.02562 * 7 2 1 9 9 C 1.36843 * 119.99837 * 179.97438 * 8 7 2 10 10 H 1.07997 * 119.99835 * 0.02562 * 9 8 7 11 11 C 1.38748 * 119.99699 * 180.02562 * 9 8 7 12 12 N 1.31626 * 120.00393 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99739 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47099 * 90.00192 * 13 11 9 15 15 H 1.48504 * 109.47088 * 209.99683 * 13 11 9 16 16 H 1.48498 * 109.47098 * 329.99780 * 13 11 9 17 17 O 1.36515 * 108.62399 * 180.25091 * 5 4 3 18 18 C 1.43981 * 105.49252 * 342.68640 * 17 5 4 19 19 O 1.36575 * 131.43488 * 179.85601 * 4 3 2 20 20 H 1.08995 * 109.46649 * 270.22824 * 1 2 3 21 21 H 1.08999 * 109.46597 * 30.22519 * 1 2 3 22 22 H 1.08991 * 109.47110 * 150.22790 * 1 2 3 23 23 H 1.08001 * 119.92964 * 0.10234 * 3 2 1 24 24 H 1.08000 * 120.01803 * 180.02562 * 6 5 4 25 25 H 0.97003 * 120.00216 * 359.97438 * 8 7 2 26 26 H 0.97002 * 119.99958 * 180.02562 * 12 11 9 27 27 H 1.08994 * 110.56494 * 268.60460 * 18 17 5 28 28 H 1.09001 * 110.56159 * 145.74348 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1965 0.0000 4 6 3.5831 1.2005 -0.0046 5 6 4.2830 -0.0051 0.0001 6 6 3.5924 -1.2040 0.0047 7 6 2.2017 -1.2044 0.0048 8 7 1.5047 -2.4115 0.0090 9 6 2.1888 -3.5967 0.0132 10 1 3.2688 -3.5967 0.0136 11 6 1.4949 -4.7982 0.0169 12 7 0.1787 -4.7981 0.0159 13 14 2.4288 -6.4160 0.0233 14 1 2.6752 -6.8398 1.4251 15 1 1.6267 -7.4534 -0.6736 16 1 3.7269 -6.2410 -0.6763 17 8 5.6207 0.2674 -0.0003 18 6 5.7334 1.6406 -0.4182 19 8 4.4839 2.2270 -0.0083 20 1 -0.3632 0.0041 1.0276 21 1 -0.3632 0.8880 -0.5173 22 1 -0.3633 -0.8919 -0.5102 23 1 1.6556 2.1309 0.0017 24 1 4.1331 -2.1390 0.0088 25 1 0.5346 -2.4115 0.0090 26 1 -0.3064 -5.6381 0.0189 27 1 5.8491 1.7032 -1.5002 28 1 6.5684 2.1270 0.0861 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258714329.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:40 Heat of formation + Delta-G solvation = -54.521993 kcal Electronic energy + Delta-G solvation = -14623.386493 eV Core-core repulsion = 12025.554377 eV Total energy + Delta-G solvation = -2597.832117 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.72636 -39.67773 -36.96611 -36.32600 -33.53935 -32.81745 -29.64952 -27.78348 -26.92436 -25.57264 -23.17800 -22.55165 -19.91590 -18.99589 -18.20257 -17.72862 -17.10797 -16.48376 -16.02831 -15.52903 -15.10664 -14.69272 -14.65013 -14.41063 -13.71065 -13.46155 -13.35137 -13.14368 -13.02985 -12.82913 -12.45042 -12.32704 -12.07288 -11.59655 -11.11458 -10.26839 -9.32928 -8.49317 -8.24139 -5.71691 0.51421 0.68552 1.42349 1.46634 1.53907 2.06663 2.28027 2.75185 2.83941 3.25993 3.47969 3.89525 4.02458 4.21055 4.31180 4.35645 4.50797 4.70108 4.91642 4.94596 5.10267 5.24651 5.32915 5.43977 5.50582 5.66542 5.76140 5.91117 6.51343 6.81627 7.44730 7.61783 8.68553 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.036057 B = 0.008278 C = 0.006776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.358657 B = 3381.820866 C = 4131.277933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.203 4.203 3 C -0.032 4.032 4 C -0.103 4.103 5 C 0.075 3.925 6 C -0.226 4.226 7 C 0.208 3.792 8 N -0.571 5.571 9 C -0.322 4.322 10 H 0.099 0.901 11 C -0.024 4.024 12 N -0.925 5.925 13 Si 0.995 3.005 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.264 1.264 17 O -0.335 6.335 18 C 0.207 3.793 19 O -0.327 6.327 20 H 0.066 0.934 21 H 0.087 0.913 22 H 0.046 0.954 23 H 0.149 0.851 24 H 0.114 0.886 25 H 0.400 0.600 26 H 0.276 0.724 27 H 0.092 0.908 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.510 8.720 -1.174 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.209 4.209 3 C -0.052 4.052 4 C -0.150 4.150 5 C 0.030 3.970 6 C -0.251 4.251 7 C 0.089 3.911 8 N -0.178 5.178 9 C -0.452 4.452 10 H 0.117 0.883 11 C -0.223 4.223 12 N -0.564 5.564 13 Si 0.818 3.182 14 H -0.199 1.199 15 H -0.203 1.203 16 H -0.189 1.189 17 O -0.252 6.252 18 C 0.096 3.904 19 O -0.245 6.245 20 H 0.084 0.916 21 H 0.106 0.894 22 H 0.065 0.935 23 H 0.167 0.833 24 H 0.132 0.868 25 H 0.237 0.763 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.564 8.357 -1.078 9.583 hybrid contribution 0.198 -0.988 -0.037 1.008 sum 4.762 7.369 -1.115 8.845 Atomic orbital electron populations 1.20432 0.89442 1.02493 1.02062 1.19096 0.96698 0.90046 1.15107 1.19624 0.88498 0.98113 0.98921 1.19326 0.92264 0.84545 1.18830 1.19450 0.82106 0.94743 1.00694 1.19191 0.92277 0.94971 1.18685 1.17518 0.90335 0.86793 0.96440 1.40994 1.07955 1.01764 1.67059 1.19973 0.93289 0.83752 1.48178 0.88303 1.26078 0.96534 1.02646 0.97081 1.69779 1.07098 1.29243 1.50315 0.84874 0.78011 0.76728 0.78539 1.19879 1.20313 1.18854 1.87221 1.21382 1.31611 1.84974 1.25896 0.88168 0.75404 1.00966 1.87169 1.19092 1.31534 1.86709 0.91565 0.89374 0.93504 0.83298 0.86826 0.76325 0.91447 0.89073 0.82527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.84 9.57 71.24 0.68 -2.15 15 2 C -0.20 -7.90 5.90 -19.70 -0.12 -8.02 15 3 C -0.03 -1.16 9.70 22.33 0.22 -0.94 15 4 C -0.10 -4.01 7.15 22.64 0.16 -3.85 15 5 C 0.08 3.16 7.14 22.58 0.16 3.32 15 6 C -0.23 -10.38 9.31 22.50 0.21 -10.17 15 7 C 0.21 9.54 6.60 38.33 0.25 9.79 15 8 N -0.57 -28.48 5.34 -184.30 -0.98 -29.47 15 9 C -0.32 -16.92 9.55 84.03 0.80 -16.11 15 10 H 0.10 5.09 5.68 -2.91 -0.02 5.08 15 11 C -0.02 -1.24 5.50 84.85 0.47 -0.77 15 12 N -0.93 -49.63 13.05 21.64 0.28 -49.35 15 13 Si 0.99 41.04 29.55 68.60 2.03 43.07 15 14 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 15 H -0.28 -11.19 7.11 99.48 0.71 -10.49 15 16 H -0.26 -10.57 7.11 99.48 0.71 -9.87 15 17 O -0.34 -12.50 11.40 -76.23 -0.87 -13.37 15 18 C 0.21 5.69 8.89 113.37 1.01 6.70 15 19 O -0.33 -11.21 11.41 -76.93 -0.88 -12.09 15 20 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 21 H 0.09 2.27 8.09 -2.39 -0.02 2.25 15 22 H 0.05 1.64 6.54 -2.39 -0.02 1.63 15 23 H 0.15 4.30 8.06 -2.91 -0.02 4.28 15 24 H 0.11 5.39 5.95 -2.91 -0.02 5.37 15 25 H 0.40 19.98 5.87 -92.71 -0.54 19.44 15 26 H 0.28 13.96 8.31 -92.71 -0.77 13.19 15 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 15 28 H 0.16 2.93 8.14 -2.39 -0.02 2.91 15 Total: -1.00 -59.94 244.31 4.08 -55.86 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.66 Total: 27.56 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 3.84 Total: -22.20 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -0.70 Total: -78.82 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.75 Total: -25.46 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -59.94 4.08 -55.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258714329.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.336 kcal (2) G-P(sol) polarization free energy of solvation -59.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds