Wall clock time and date at job start Mon Mar 30 2020 02:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30930 * 1 3 3 Si 1.86798 * 120.00216 * 2 1 4 4 H 1.48503 * 109.47127 * 239.99916 * 3 2 1 5 5 H 1.48497 * 109.47037 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47255 * 120.00035 * 3 2 1 7 7 C 1.39813 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00045 * 162.55739 * 7 2 1 9 9 C 1.41123 * 120.00033 * 342.55727 * 7 2 1 10 10 C 1.40950 * 120.28173 * 154.95080 * 9 7 2 11 11 C 1.36105 * 120.07091 * 180.63323 * 10 9 7 12 12 C 1.40055 * 120.89156 * 359.88393 * 11 10 9 13 13 C 1.39978 * 119.54226 * 359.40796 * 12 11 10 14 14 C 1.38221 * 120.07024 * 0.80995 * 13 12 11 15 15 S 1.76422 * 121.14209 * 180.85489 * 13 12 11 16 16 C 1.81710 * 102.52293 * 343.73906 * 15 13 12 17 17 C 1.53591 * 107.77667 * 46.87127 * 16 15 13 18 18 N 1.38621 * 117.75166 * 178.85458 * 12 11 10 19 19 H 0.96993 * 119.99772 * 0.02562 * 1 2 3 20 20 H 1.08010 * 119.96123 * 0.61467 * 10 9 7 21 21 H 1.08003 * 119.55255 * 179.91526 * 11 10 9 22 22 H 1.08001 * 120.00816 * 179.66075 * 14 13 12 23 23 H 1.09001 * 109.79672 * 166.44166 * 16 15 13 24 24 H 1.08999 * 109.79913 * 287.29856 * 16 15 13 25 25 H 1.09004 * 109.59847 * 53.92688 * 17 16 15 26 26 H 1.09000 * 109.60688 * 174.41552 * 17 16 15 27 27 H 0.97001 * 118.52629 * 341.46602 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.0971 1.6963 -1.2125 5 1 1.2784 2.7464 0.0006 6 1 3.0971 1.6963 1.2125 7 6 2.0083 -1.2108 -0.0005 8 1 3.0511 -1.2322 -0.2809 9 6 1.3514 -2.4050 0.3653 10 6 1.8197 -3.6475 -0.1077 11 6 1.1751 -4.7955 0.2373 12 6 0.0450 -4.7650 1.0640 13 6 -0.4204 -3.5383 1.5519 14 6 0.2234 -2.3656 1.2043 15 16 -1.8264 -3.4530 2.6141 16 6 -2.5953 -5.0829 2.3815 17 6 -1.4878 -6.1423 2.4803 18 7 -0.5750 -5.9703 1.3545 19 1 -0.4849 0.8400 -0.0004 20 1 2.6909 -3.6885 -0.7449 21 1 1.5404 -5.7428 -0.1309 22 1 -0.1398 -1.4192 1.5769 23 1 -3.3403 -5.2539 3.1586 24 1 -3.0668 -5.1320 1.4000 25 1 -0.9428 -6.0155 3.4158 26 1 -1.9297 -7.1380 2.4439 27 1 -0.3940 -6.7336 0.7839 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259225448.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:03 Heat of formation + Delta-G solvation = 2.483482 kcal Electronic energy + Delta-G solvation = -12554.814348 eV Core-core repulsion = 10402.207045 eV Total energy + Delta-G solvation = -2152.607303 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.81248 -37.23045 -35.05193 -31.94199 -31.43763 -29.80354 -26.74774 -23.88384 -23.26303 -21.82111 -19.37512 -18.25293 -17.29242 -16.86079 -16.72579 -15.84045 -14.94659 -14.72006 -14.46410 -14.04444 -13.86405 -13.63384 -13.22112 -12.98865 -12.79437 -12.70679 -12.36437 -11.71512 -11.40316 -11.09842 -10.84003 -10.40579 -10.17547 -8.60905 -8.55415 -7.94736 -6.10954 0.79197 0.99269 1.08220 1.39401 1.50710 1.54816 1.74817 2.25161 2.74755 2.84221 3.70538 3.94044 4.21075 4.36994 4.38940 4.62989 4.77420 4.95231 4.99502 5.16243 5.34531 5.47585 5.66811 5.75141 6.06171 6.26177 6.58869 6.74154 7.00811 7.03246 7.15251 8.43798 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.044565 B = 0.008996 C = 0.007697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.151048 B = 3111.690352 C = 3636.991992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.031 3.969 3 Si 0.979 3.021 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.501 4.501 8 H 0.076 0.924 9 C 0.050 3.950 10 C -0.189 4.189 11 C -0.146 4.146 12 C 0.099 3.901 13 C -0.131 4.131 14 C -0.136 4.136 15 S -0.198 6.198 16 C -0.109 4.109 17 C 0.131 3.869 18 N -0.756 5.756 19 H 0.283 0.717 20 H 0.107 0.893 21 H 0.128 0.872 22 H 0.100 0.900 23 H 0.142 0.858 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.130 0.870 27 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 -8.861 3.330 10.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.182 4.182 3 Si 0.800 3.200 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.532 4.532 8 H 0.094 0.906 9 C 0.045 3.955 10 C -0.210 4.210 11 C -0.169 4.169 12 C -0.005 4.005 13 C -0.247 4.247 14 C -0.160 4.160 15 S 0.040 5.960 16 C -0.259 4.259 17 C 0.005 3.995 18 N -0.392 5.392 19 H 0.093 0.907 20 H 0.125 0.875 21 H 0.146 0.854 22 H 0.118 0.882 23 H 0.159 0.841 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.084 -7.791 4.234 9.762 hybrid contribution 0.805 -0.086 -1.182 1.432 sum -3.279 -7.877 3.053 9.062 Atomic orbital electron populations 1.69939 1.08934 1.30061 1.37511 1.26687 0.95423 1.04387 0.91690 0.85304 0.78718 0.75995 0.79974 1.18173 1.19608 1.18721 1.19584 0.98099 0.92363 1.43151 0.90578 1.17743 0.92888 0.93503 0.91330 1.20870 1.02890 0.92704 1.04510 1.20359 0.95586 0.98119 1.02817 1.17147 0.95135 0.85323 1.02912 1.20934 1.00650 0.95126 1.07976 1.20776 0.99734 0.94877 1.00644 1.85121 1.28465 1.25548 1.56835 1.24163 1.01239 0.93750 1.06728 1.21495 0.89088 0.99455 0.89489 1.43675 1.52548 1.09083 1.33848 0.90656 0.87454 0.85372 0.88246 0.84057 0.89911 0.92761 0.85208 0.76347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.90 10.97 21.81 0.24 -46.66 15 2 C 0.03 1.65 5.14 85.21 0.44 2.08 15 3 Si 0.98 40.42 29.59 68.60 2.03 42.45 15 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 15 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 15 7 C -0.50 -28.15 9.04 23.36 0.21 -27.94 15 8 H 0.08 4.07 7.90 -2.91 -0.02 4.05 15 9 C 0.05 2.82 5.56 -21.32 -0.12 2.70 15 10 C -0.19 -9.32 9.73 22.44 0.22 -9.10 15 11 C -0.15 -6.30 9.68 22.21 0.22 -6.09 15 12 C 0.10 4.27 6.55 38.93 0.26 4.52 15 13 C -0.13 -6.47 6.07 22.69 0.14 -6.33 15 14 C -0.14 -7.64 8.34 22.85 0.19 -7.45 15 15 S -0.20 -8.16 22.12 -56.49 -1.25 -9.41 15 16 C -0.11 -3.05 6.69 72.18 0.48 -2.57 15 17 C 0.13 3.29 6.93 86.68 0.60 3.89 15 18 N -0.76 -24.03 5.42 -338.59 -1.83 -25.86 15 19 H 0.28 14.55 8.30 -92.71 -0.77 13.78 15 20 H 0.11 4.90 8.06 -2.91 -0.02 4.88 15 21 H 0.13 4.51 8.05 -2.91 -0.02 4.48 15 22 H 0.10 6.03 6.19 -2.91 -0.02 6.01 15 23 H 0.14 2.87 8.14 -2.39 -0.02 2.85 15 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 15 26 H 0.13 2.00 8.14 -2.39 -0.02 1.98 15 27 H 0.40 10.42 8.74 -92.71 -0.81 9.61 15 Total: -1.00 -65.88 242.94 2.19 -63.69 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.38 Total: 22.08 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 2.63 Total: -46.28 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -1.60 Total: -72.53 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.25 Total: -9.41 kcal Total: -65.88 2.19 -63.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259225448.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.173 kcal (2) G-P(sol) polarization free energy of solvation -65.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds