Wall clock time and date at job start Mon Mar 30 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.30767 * 121.78636 * 2 1 4 4 S 1.75753 * 109.95159 * 179.97438 * 3 2 1 5 5 C 1.76196 * 90.71902 * 0.02562 * 4 3 2 6 6 C 1.36754 * 141.95064 * 180.02562 * 5 4 3 7 7 C 1.40337 * 107.24532 * 179.97438 * 6 5 4 8 8 C 1.50700 * 126.19579 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46869 * 90.02590 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.34728 * 107.61688 * 0.26341 * 7 6 5 18 18 N 1.35685 * 109.36428 * 359.97438 * 5 4 3 19 19 H 1.09004 * 109.47212 * 90.01927 * 1 2 3 20 20 H 1.08998 * 109.47075 * 210.02544 * 1 2 3 21 21 H 1.09003 * 109.46461 * 330.02240 * 1 2 3 22 22 H 1.07998 * 125.02238 * 359.97438 * 3 2 1 23 23 H 1.08002 * 126.38048 * 0.02562 * 6 5 4 24 24 H 1.09004 * 109.47210 * 330.02883 * 8 7 6 25 25 H 1.08994 * 109.47551 * 210.02536 * 8 7 6 26 26 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 27 27 H 1.07991 * 125.71550 * 179.71352 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1115 0.0000 4 16 3.9160 0.7511 0.0007 5 6 3.5763 -0.9778 0.0002 6 6 4.1958 -2.1970 0.0007 7 6 3.1893 -3.1750 0.0002 8 6 3.3986 -4.6674 -0.0001 9 6 3.4675 -5.1653 1.4207 10 1 3.3690 -4.4705 2.2417 11 6 3.6498 -6.5086 1.6724 12 7 3.7693 -7.3546 0.6726 13 14 3.7275 -7.1267 3.4334 14 1 2.4565 -6.8008 4.1289 15 1 3.9289 -8.5980 3.4331 16 1 4.8592 -6.4727 4.1382 17 6 2.0020 -2.5383 -0.0063 18 7 2.2335 -1.1725 0.0001 19 1 -0.3634 -0.0003 -1.0277 20 1 -0.3633 -0.8897 0.5142 21 1 -0.3632 0.8902 0.5135 22 1 1.7706 2.1043 -0.0004 23 1 5.2611 -2.3743 0.0020 24 1 4.3308 -4.9035 -0.5134 25 1 2.5681 -5.1507 -0.5145 26 1 3.8980 -8.2996 0.8497 27 1 1.0321 -3.0131 -0.0127 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259453140.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:04 Heat of formation + Delta-G solvation = 70.178383 kcal Electronic energy + Delta-G solvation = -12243.283431 eV Core-core repulsion = 10093.611600 eV Total energy + Delta-G solvation = -2149.671832 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.42326 -36.11800 -33.08875 -30.75296 -29.02410 -28.15128 -26.29354 -23.18178 -21.61260 -19.37646 -18.70097 -17.64880 -16.22366 -15.22876 -14.68981 -14.53667 -14.18074 -13.53230 -13.12975 -12.60308 -12.36577 -12.25493 -11.96139 -11.71091 -11.00812 -10.85732 -10.69601 -10.52266 -10.34294 -9.68081 -9.44700 -9.27761 -8.35255 -7.60238 -6.75936 -5.97262 -3.99914 1.42642 1.68498 2.12546 2.79911 3.15746 3.36220 3.39915 3.42751 3.70561 4.51136 4.72157 5.10330 5.32661 5.34909 5.37579 5.48683 5.71521 5.92547 6.17541 6.23428 6.72410 6.86824 7.23520 7.45490 7.62487 7.86840 7.94235 7.99911 8.42858 9.05038 9.63211 11.12608 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.044306 B = 0.006754 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.816066 B = 4144.812487 C = 4310.093955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.099 3.901 3 C -0.252 4.252 4 S 0.069 5.931 5 C -0.056 4.056 6 C -0.145 4.145 7 C -0.063 4.063 8 C 0.078 3.922 9 C -0.508 4.508 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.034 4.034 18 N -0.401 5.401 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.083 0.917 22 H 0.179 0.821 23 H 0.140 0.860 24 H 0.031 0.969 25 H 0.028 0.972 26 H 0.262 0.738 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 15.084 -1.988 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.012 4.012 3 C -0.389 4.389 4 S 0.327 5.673 5 C -0.275 4.275 6 C -0.179 4.179 7 C -0.069 4.069 8 C 0.040 3.960 9 C -0.546 4.546 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.159 4.159 18 N -0.075 5.075 19 H 0.099 0.901 20 H 0.094 0.906 21 H 0.102 0.898 22 H 0.196 0.804 23 H 0.158 0.842 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.875 15.912 -2.024 16.502 hybrid contribution -1.149 -1.149 1.025 1.921 sum -5.024 14.763 -1.000 15.626 Atomic orbital electron populations 1.20637 0.87413 1.04086 1.03466 1.19137 0.95519 0.84044 1.02501 1.24278 0.96602 1.01092 1.16966 1.84157 1.03763 0.94474 1.84883 1.23300 0.86927 0.98324 1.18925 1.20476 0.99458 0.87737 1.10262 1.20305 0.90244 0.98052 0.98342 1.17808 0.97925 0.82806 0.97436 1.21077 1.49402 0.92369 0.91796 0.92611 1.24997 0.95421 0.96877 0.97073 1.69950 1.49961 1.03034 1.30640 0.86622 0.78630 0.77502 0.85049 1.20309 1.21305 1.20211 1.21829 1.00446 0.77185 1.16435 1.42497 1.05089 1.05226 1.54694 0.90136 0.90567 0.89795 0.80418 0.84209 0.95068 0.95390 0.92886 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.17 36.01 0.37 -0.63 15 2 C 0.10 1.44 6.75 -81.50 -0.55 0.89 15 3 C -0.25 -3.29 10.78 29.08 0.31 -2.98 15 4 S 0.07 1.05 23.37 -107.50 -2.51 -1.46 15 5 C -0.06 -1.08 7.77 -16.38 -0.13 -1.21 15 6 C -0.14 -3.09 10.87 -39.33 -0.43 -3.51 15 7 C -0.06 -1.45 5.30 -105.08 -0.56 -2.00 15 8 C 0.08 2.05 5.47 -29.03 -0.16 1.89 15 9 C -0.51 -14.48 9.09 -34.44 -0.31 -14.80 15 10 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 12 N -0.90 -26.69 13.29 55.43 0.74 -25.95 15 13 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 15 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 17 C -0.03 -0.68 11.75 -15.76 -0.19 -0.87 15 18 N -0.40 -7.42 3.16 -58.23 -0.18 -7.61 15 19 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.08 0.83 8.14 -51.93 -0.42 0.40 15 21 H 0.08 0.65 8.10 -51.93 -0.42 0.23 15 22 H 0.18 1.64 8.06 -52.49 -0.42 1.22 15 23 H 0.14 2.80 8.06 -52.49 -0.42 2.38 15 24 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.03 0.76 8.14 -51.93 -0.42 0.33 15 26 H 0.26 7.36 8.31 -40.82 -0.34 7.03 15 27 H 0.16 2.95 8.06 -52.49 -0.42 2.53 15 LS Contribution 254.96 15.07 3.84 3.84 Total: -1.00 -31.27 254.96 -7.80 -39.07 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -2.92 Total: -2.99 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -1.74 Total: -21.69 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.55 Total: -33.56 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.51 Total: -1.46 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.27 -7.80 -39.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259453140.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.245 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds