Wall clock time and date at job start Mon Mar 30 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.30767 * 121.78636 * 2 1 4 4 S 1.75753 * 109.95159 * 179.97438 * 3 2 1 5 5 C 1.76196 * 90.71902 * 0.02562 * 4 3 2 6 6 C 1.36754 * 141.95064 * 180.02562 * 5 4 3 7 7 C 1.40337 * 107.24532 * 179.97438 * 6 5 4 8 8 C 1.50700 * 126.19579 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46869 * 90.02590 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.34728 * 107.61688 * 0.26341 * 7 6 5 18 18 N 1.35685 * 109.36428 * 359.97438 * 5 4 3 19 19 H 1.09004 * 109.47212 * 90.01927 * 1 2 3 20 20 H 1.08998 * 109.47075 * 210.02544 * 1 2 3 21 21 H 1.09003 * 109.46461 * 330.02240 * 1 2 3 22 22 H 1.07998 * 125.02238 * 359.97438 * 3 2 1 23 23 H 1.08002 * 126.38048 * 0.02562 * 6 5 4 24 24 H 1.09004 * 109.47210 * 330.02883 * 8 7 6 25 25 H 1.08994 * 109.47551 * 210.02536 * 8 7 6 26 26 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 27 27 H 1.07991 * 125.71550 * 179.71352 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1115 0.0000 4 16 3.9160 0.7511 0.0007 5 6 3.5763 -0.9778 0.0002 6 6 4.1958 -2.1970 0.0007 7 6 3.1893 -3.1750 0.0002 8 6 3.3986 -4.6674 -0.0001 9 6 3.4675 -5.1653 1.4207 10 1 3.3690 -4.4705 2.2417 11 6 3.6498 -6.5086 1.6724 12 7 3.7693 -7.3546 0.6726 13 14 3.7275 -7.1267 3.4334 14 1 2.4565 -6.8008 4.1289 15 1 3.9289 -8.5980 3.4331 16 1 4.8592 -6.4727 4.1382 17 6 2.0020 -2.5383 -0.0063 18 7 2.2335 -1.1725 0.0001 19 1 -0.3634 -0.0003 -1.0277 20 1 -0.3633 -0.8897 0.5142 21 1 -0.3632 0.8902 0.5135 22 1 1.7706 2.1043 -0.0004 23 1 5.2611 -2.3743 0.0020 24 1 4.3308 -4.9035 -0.5134 25 1 2.5681 -5.1507 -0.5145 26 1 3.8980 -8.2996 0.8497 27 1 1.0321 -3.0131 -0.0127 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259453140.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:04 Heat of formation + Delta-G solvation = 52.639723 kcal Electronic energy + Delta-G solvation = -12244.043965 eV Core-core repulsion = 10093.611600 eV Total energy + Delta-G solvation = -2150.432365 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.85905 -37.47055 -35.14761 -32.41350 -30.38791 -29.62965 -27.83160 -25.16335 -23.03001 -20.78301 -20.31276 -18.90507 -18.43662 -16.57440 -16.52857 -15.98869 -15.35867 -14.95553 -14.41095 -14.04074 -13.93604 -13.67612 -13.53583 -13.23107 -12.89840 -12.57902 -12.31062 -12.01185 -11.92351 -11.67182 -11.38272 -10.73544 -10.56529 -9.22111 -8.15982 -8.09309 -6.28652 0.19155 0.36036 0.91860 1.40385 1.41096 1.43994 1.51929 1.84394 2.01285 2.45959 3.14046 3.68415 4.01696 4.24104 4.47920 4.52122 4.62697 4.65527 4.86848 4.99889 5.08675 5.16035 5.36671 5.54215 5.77883 5.87068 6.09341 6.24050 6.41480 6.82758 7.39170 8.93039 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.044306 B = 0.006754 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.816066 B = 4144.812487 C = 4310.093955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.065 3.935 3 C -0.226 4.226 4 S 0.101 5.899 5 C -0.064 4.064 6 C -0.183 4.183 7 C -0.101 4.101 8 C 0.089 3.911 9 C -0.526 4.526 10 H 0.050 0.950 11 C 0.005 3.995 12 N -0.930 5.930 13 Si 0.965 3.035 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.271 1.271 17 C -0.030 4.030 18 N -0.400 5.400 19 H 0.094 0.906 20 H 0.066 0.934 21 H 0.117 0.883 22 H 0.228 0.772 23 H 0.136 0.864 24 H 0.003 0.997 25 H 0.008 0.992 26 H 0.265 0.735 27 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 17.691 -0.961 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.043 4.043 3 C -0.362 4.362 4 S 0.359 5.641 5 C -0.285 4.285 6 C -0.217 4.217 7 C -0.107 4.107 8 C 0.051 3.949 9 C -0.565 4.565 10 H 0.068 0.932 11 C -0.193 4.193 12 N -0.571 5.571 13 Si 0.789 3.211 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.196 1.196 17 C -0.157 4.157 18 N -0.073 5.073 19 H 0.113 0.887 20 H 0.085 0.915 21 H 0.136 0.864 22 H 0.244 0.756 23 H 0.154 0.846 24 H 0.021 0.979 25 H 0.027 0.973 26 H 0.074 0.926 27 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.207 18.556 -1.002 19.299 hybrid contribution -0.739 -1.768 0.646 2.022 sum -5.946 16.788 -0.356 17.813 Atomic orbital electron populations 1.20777 0.84283 1.05304 1.04760 1.19883 0.97666 0.82742 1.04035 1.24967 0.94953 1.02703 1.13569 1.84129 1.05607 0.90419 1.83961 1.23718 0.87431 1.00298 1.17057 1.20409 0.99257 0.88812 1.13210 1.19966 0.92362 0.96459 1.01879 1.17478 0.95577 0.85685 0.96110 1.21354 1.49703 0.92821 0.92573 0.93193 1.25896 0.94705 0.96943 1.01716 1.70073 1.50535 1.03439 1.33011 0.85508 0.79022 0.77122 0.79425 1.19230 1.20405 1.19608 1.21817 1.00030 0.78399 1.15481 1.42723 1.05369 1.05624 1.53572 0.88742 0.91499 0.86421 0.75596 0.84648 0.97917 0.97349 0.92570 0.80494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 10.17 71.24 0.72 -0.83 15 2 C 0.06 1.67 6.75 41.80 0.28 1.96 15 3 C -0.23 -4.83 10.78 68.02 0.73 -4.10 15 4 S 0.10 2.78 23.37 -56.49 -1.32 1.46 15 5 C -0.06 -2.46 7.77 83.75 0.65 -1.81 15 6 C -0.18 -8.14 10.87 22.43 0.24 -7.89 15 7 C -0.10 -4.84 5.30 -20.16 -0.11 -4.95 15 8 C 0.09 5.01 5.47 29.10 0.16 5.16 15 9 C -0.53 -31.20 9.09 25.60 0.23 -30.96 15 10 H 0.05 2.94 7.74 -2.91 -0.02 2.92 15 11 C 0.01 0.31 5.46 84.66 0.46 0.77 15 12 N -0.93 -57.02 13.29 21.45 0.28 -56.74 15 13 Si 0.96 45.24 29.54 68.60 2.03 47.26 15 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 15 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 16 H -0.27 -12.38 7.11 99.48 0.71 -11.68 15 17 C -0.03 -1.23 11.75 82.83 0.97 -0.26 15 18 N -0.40 -14.37 3.16 -338.14 -1.07 -15.44 15 19 H 0.09 1.34 8.14 -2.39 -0.02 1.32 15 20 H 0.07 1.27 8.14 -2.39 -0.02 1.25 15 21 H 0.12 1.19 8.10 -2.39 -0.02 1.17 15 22 H 0.23 2.59 8.06 -2.91 -0.02 2.57 15 23 H 0.14 5.84 8.06 -2.91 -0.02 5.82 15 24 H 0.00 0.15 8.14 -2.38 -0.02 0.13 15 25 H 0.01 0.48 8.14 -2.39 -0.02 0.46 15 26 H 0.27 15.23 8.31 -92.70 -0.77 14.46 15 27 H 0.18 6.52 8.06 -2.92 -0.02 6.50 15 Total: -1.00 -70.09 254.96 5.44 -64.65 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: 1.16 Total: 1.70 kcal Atomic # 6 Polarization: -47.26 SS G_CDS: 4.36 Total: -42.90 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -0.78 Total: -72.18 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.32 Total: 1.46 kcal Total: -70.09 5.44 -64.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259453140.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.292 kcal (2) G-P(sol) polarization free energy of solvation -70.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds