Wall clock time and date at job start Mon Mar 30 2020 02:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38343 * 126.29757 * 2 1 4 4 C 1.39498 * 107.79056 * 180.02562 * 3 2 1 5 5 S 1.76300 * 141.60126 * 179.97438 * 4 3 2 6 6 C 1.75756 * 90.69410 * 180.02562 * 5 4 3 7 7 C 1.31027 * 109.86174 * 0.02562 * 6 5 4 8 8 C 1.50697 * 121.78678 * 180.02562 * 7 6 5 9 9 N 1.35544 * 109.09137 * 359.97438 * 4 3 2 10 10 C 1.39549 * 126.29587 * 179.73113 * 2 1 3 11 11 C 1.39804 * 126.03926 * 359.92223 * 10 2 1 12 12 H 1.08004 * 119.99893 * 219.54640 * 11 10 2 13 13 C 1.39700 * 120.00349 * 39.53934 * 11 10 2 14 14 N 1.31182 * 119.99914 * 18.42095 * 13 11 10 15 15 Si 1.86797 * 120.00400 * 198.42147 * 13 11 10 16 16 H 1.48504 * 109.46913 * 59.99928 * 15 13 11 17 17 H 1.48504 * 109.47116 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47290 * 299.99932 * 15 13 11 19 19 H 1.08992 * 109.47540 * 90.56416 * 1 2 3 20 20 H 1.08995 * 109.47337 * 210.57076 * 1 2 3 21 21 H 1.09001 * 109.46894 * 330.56603 * 1 2 3 22 22 H 1.08004 * 126.10710 * 359.97438 * 3 2 1 23 23 H 1.07999 * 125.06648 * 179.97438 * 6 5 4 24 24 H 1.09002 * 109.47332 * 269.97523 * 8 7 6 25 25 H 1.08998 * 109.47357 * 29.97239 * 8 7 6 26 26 H 1.09001 * 109.47657 * 149.97761 * 8 7 6 27 27 H 0.96998 * 119.99746 * 174.74914 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3259 1.1150 0.0000 4 6 3.6488 0.6722 -0.0006 5 16 5.3066 1.2720 -0.0015 6 6 5.9246 -0.3733 -0.0024 7 6 4.9275 -1.2233 -0.0025 8 6 5.1544 -2.7131 -0.0026 9 7 3.6626 -0.6832 -0.0004 10 6 2.3331 -1.1247 0.0053 11 6 1.9088 -2.4568 0.0131 12 1 2.4329 -3.1869 0.6121 13 6 0.8070 -2.8436 -0.7538 14 7 0.3940 -2.0824 -1.7391 15 14 -0.0782 -4.4445 -0.3762 16 1 -0.6038 -4.4040 1.0121 17 1 -1.2052 -4.6232 -1.3266 18 1 0.8703 -5.5789 -0.5135 19 1 -0.3634 -0.0101 -1.0275 20 1 -0.3634 -0.8848 0.5226 21 1 -0.3633 0.8950 0.5050 22 1 1.9995 2.1445 -0.0004 23 1 6.9702 -0.6434 -0.0035 24 1 5.2087 -3.0724 -1.0303 25 1 6.0891 -2.9383 0.5108 26 1 4.3295 -3.2064 0.5115 27 1 -0.3217 -2.3858 -2.3192 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259484031.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:24 Heat of formation + Delta-G solvation = 61.574527 kcal Electronic energy + Delta-G solvation = -12910.694036 eV Core-core repulsion = 10760.649113 eV Total energy + Delta-G solvation = -2150.044923 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.23979 -35.37835 -33.38565 -30.21528 -29.05203 -27.25720 -26.15480 -23.73422 -20.97686 -18.86354 -18.48209 -17.07040 -15.88980 -15.05444 -14.33846 -13.64052 -13.48629 -12.99597 -12.55291 -12.44652 -12.11682 -11.62116 -11.58403 -11.30231 -11.18400 -11.00222 -10.57692 -10.53005 -10.06903 -9.79116 -9.56733 -8.97901 -8.50526 -6.88076 -6.70104 -6.17440 -4.25143 2.17940 2.55046 2.96075 3.00224 3.08005 3.11141 3.65620 3.90246 4.11596 4.26219 5.08684 5.47519 5.78666 6.02731 6.08627 6.25199 6.41848 6.68769 6.73780 6.88677 7.08990 7.17130 7.34190 7.47740 7.62096 7.91767 8.07971 8.46802 8.59158 8.86740 9.09808 10.29592 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.036487 B = 0.011267 C = 0.008998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.208613 B = 2484.631387 C = 3111.123506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.213 4.213 3 C -0.113 4.113 4 C -0.144 4.144 5 S 0.006 5.994 6 C -0.279 4.279 7 C 0.131 3.869 8 C -0.098 4.098 9 N -0.413 5.413 10 C 0.247 3.753 11 C -0.469 4.469 12 H 0.076 0.924 13 C 0.086 3.914 14 N -0.793 5.793 15 Si 0.910 3.090 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.269 1.269 19 H 0.058 0.942 20 H 0.043 0.957 21 H 0.023 0.977 22 H 0.114 0.886 23 H 0.165 0.835 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 -0.961 1.777 4.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.218 4.218 3 C -0.147 4.147 4 C -0.358 4.358 5 S 0.260 5.740 6 C -0.417 4.417 7 C 0.020 3.980 8 C -0.157 4.157 9 N -0.090 5.090 10 C 0.141 3.859 11 C -0.504 4.504 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.419 5.419 15 Si 0.735 3.265 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.193 1.193 19 H 0.077 0.923 20 H 0.062 0.938 21 H 0.042 0.958 22 H 0.132 0.868 23 H 0.182 0.818 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.513 0.232 1.630 4.803 hybrid contribution -0.813 -1.967 -0.009 2.128 sum 3.700 -1.735 1.621 4.397 Atomic orbital electron populations 1.19726 0.91090 0.97937 1.00384 1.19094 0.94197 0.90402 1.18142 1.20074 0.88118 0.97303 1.09172 1.22983 0.96782 0.86256 1.29804 1.83494 0.96042 1.06394 1.88059 1.23980 1.01362 0.95081 1.21259 1.19099 0.83405 0.96420 0.99080 1.20686 1.02714 0.89070 1.03245 1.43119 1.04402 1.05533 1.55903 1.18141 0.76050 0.93909 0.97797 1.18199 1.12425 0.92933 1.26858 0.90615 1.25584 0.95869 0.98229 0.93574 1.69976 1.24233 1.36116 1.11623 0.86339 0.79244 0.81479 0.79442 1.18871 1.20323 1.19350 0.92312 0.93787 0.95847 0.86802 0.81779 0.90570 0.91101 0.89808 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.80 8.58 36.00 0.31 -0.49 15 2 C -0.21 -5.57 5.80 -104.10 -0.60 -6.18 15 3 C -0.11 -2.83 10.85 -39.07 -0.42 -3.25 15 4 C -0.14 -3.60 7.86 -15.44 -0.12 -3.72 15 5 S 0.01 0.12 23.37 -107.50 -2.51 -2.39 15 6 C -0.28 -5.42 10.80 29.01 0.31 -5.11 15 7 C 0.13 2.83 6.75 -81.76 -0.55 2.28 15 8 C -0.10 -1.73 9.93 36.00 0.36 -1.37 15 9 N -0.41 -10.46 3.19 -55.09 -0.18 -10.64 15 10 C 0.25 6.64 6.40 -83.01 -0.53 6.11 15 11 C -0.47 -12.14 8.37 -38.45 -0.32 -12.46 15 12 H 0.08 1.87 6.35 -52.48 -0.33 1.54 15 13 C 0.09 2.11 4.21 -17.28 -0.07 2.03 15 14 N -0.79 -20.22 10.55 55.54 0.59 -19.63 15 15 Si 0.91 18.42 29.60 -169.99 -5.03 13.39 15 16 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 17 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 19 H 0.06 1.42 7.06 -51.93 -0.37 1.05 15 20 H 0.04 1.04 7.24 -51.93 -0.38 0.67 15 21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 22 H 0.11 2.54 8.06 -52.48 -0.42 2.12 15 23 H 0.16 2.54 8.06 -52.49 -0.42 2.12 15 24 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.07 0.99 8.10 -51.93 -0.42 0.57 15 26 H 0.08 1.59 5.98 -51.93 -0.31 1.28 15 27 H 0.28 6.55 8.31 -40.82 -0.34 6.21 15 LS Contribution 243.00 15.07 3.66 3.66 Total: -1.00 -28.51 243.00 -7.75 -36.26 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -2.63 Total: 1.49 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -1.65 Total: -22.15 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.41 Total: -30.27 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.51 Total: -2.39 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.51 -7.75 -36.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259484031.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.839 kcal (2) G-P(sol) polarization free energy of solvation -28.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds