Wall clock time and date at job start Mon Mar 30 2020 02:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38343 * 126.29757 * 2 1 4 4 C 1.39498 * 107.79056 * 180.02562 * 3 2 1 5 5 S 1.76300 * 141.60126 * 179.97438 * 4 3 2 6 6 C 1.75756 * 90.69410 * 180.02562 * 5 4 3 7 7 C 1.31027 * 109.86174 * 0.02562 * 6 5 4 8 8 C 1.50697 * 121.78678 * 180.02562 * 7 6 5 9 9 N 1.35544 * 109.09137 * 359.97438 * 4 3 2 10 10 C 1.39549 * 126.29587 * 179.73113 * 2 1 3 11 11 C 1.39804 * 126.03926 * 359.92223 * 10 2 1 12 12 H 1.08004 * 119.99893 * 219.54640 * 11 10 2 13 13 C 1.39700 * 120.00349 * 39.53934 * 11 10 2 14 14 N 1.31182 * 119.99914 * 18.42095 * 13 11 10 15 15 Si 1.86797 * 120.00400 * 198.42147 * 13 11 10 16 16 H 1.48504 * 109.46913 * 59.99928 * 15 13 11 17 17 H 1.48504 * 109.47116 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47290 * 299.99932 * 15 13 11 19 19 H 1.08992 * 109.47540 * 90.56416 * 1 2 3 20 20 H 1.08995 * 109.47337 * 210.57076 * 1 2 3 21 21 H 1.09001 * 109.46894 * 330.56603 * 1 2 3 22 22 H 1.08004 * 126.10710 * 359.97438 * 3 2 1 23 23 H 1.07999 * 125.06648 * 179.97438 * 6 5 4 24 24 H 1.09002 * 109.47332 * 269.97523 * 8 7 6 25 25 H 1.08998 * 109.47357 * 29.97239 * 8 7 6 26 26 H 1.09001 * 109.47657 * 149.97761 * 8 7 6 27 27 H 0.96998 * 119.99746 * 174.74914 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3259 1.1150 0.0000 4 6 3.6488 0.6722 -0.0006 5 16 5.3066 1.2720 -0.0015 6 6 5.9246 -0.3733 -0.0024 7 6 4.9275 -1.2233 -0.0025 8 6 5.1544 -2.7131 -0.0026 9 7 3.6626 -0.6832 -0.0004 10 6 2.3331 -1.1247 0.0053 11 6 1.9088 -2.4568 0.0131 12 1 2.4329 -3.1869 0.6121 13 6 0.8070 -2.8436 -0.7538 14 7 0.3940 -2.0824 -1.7391 15 14 -0.0782 -4.4445 -0.3762 16 1 -0.6038 -4.4040 1.0121 17 1 -1.2052 -4.6232 -1.3266 18 1 0.8703 -5.5789 -0.5135 19 1 -0.3634 -0.0101 -1.0275 20 1 -0.3634 -0.8848 0.5226 21 1 -0.3633 0.8950 0.5050 22 1 1.9995 2.1445 -0.0004 23 1 6.9702 -0.6434 -0.0035 24 1 5.2087 -3.0724 -1.0303 25 1 6.0891 -2.9383 0.5108 26 1 4.3295 -3.2064 0.5115 27 1 -0.3217 -2.3858 -2.3192 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259484031.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:24 Heat of formation + Delta-G solvation = 46.594688 kcal Electronic energy + Delta-G solvation = -12911.343611 eV Core-core repulsion = 10760.649113 eV Total energy + Delta-G solvation = -2150.694497 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.03931 -37.10626 -35.20147 -31.98367 -30.87895 -28.88069 -27.94346 -25.58667 -22.72994 -20.71828 -20.27458 -18.78759 -17.73812 -16.78242 -16.07482 -15.32413 -15.09364 -14.70575 -14.24645 -14.08929 -13.77544 -13.34503 -13.23199 -13.05877 -12.89832 -12.68733 -12.38310 -12.14128 -11.78073 -11.60301 -11.29402 -10.78307 -10.28690 -8.75116 -8.52779 -7.97270 -6.15232 0.49922 0.84518 1.24654 1.39063 1.45054 1.53645 1.84865 2.20037 2.36436 2.42459 3.21453 3.96544 4.39327 4.57542 4.63843 4.67697 4.84993 4.88155 5.02412 5.11124 5.20593 5.30287 5.48895 5.58537 5.78568 6.02342 6.24075 6.61362 6.70312 6.97831 7.24079 8.49017 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.036487 B = 0.011267 C = 0.008998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.208613 B = 2484.631387 C = 3111.123506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 C -0.238 4.238 3 C -0.141 4.141 4 C -0.166 4.166 5 S 0.041 5.959 6 C -0.256 4.256 7 C 0.087 3.913 8 C -0.090 4.090 9 N -0.427 5.427 10 C 0.213 3.787 11 C -0.493 4.493 12 H 0.077 0.923 13 C 0.050 3.950 14 N -0.826 5.826 15 Si 0.979 3.021 16 H -0.263 1.263 17 H -0.270 1.270 18 H -0.260 1.260 19 H 0.048 0.952 20 H 0.033 0.967 21 H 0.045 0.955 22 H 0.131 0.869 23 H 0.212 0.788 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.063 0.937 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 -1.640 2.055 5.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.243 4.243 3 C -0.175 4.175 4 C -0.381 4.381 5 S 0.296 5.704 6 C -0.393 4.393 7 C -0.022 4.022 8 C -0.149 4.149 9 N -0.103 5.103 10 C 0.106 3.894 11 C -0.528 4.528 12 H 0.095 0.905 13 C -0.166 4.166 14 N -0.453 5.453 15 Si 0.800 3.200 16 H -0.188 1.188 17 H -0.195 1.195 18 H -0.184 1.184 19 H 0.066 0.934 20 H 0.052 0.948 21 H 0.063 0.937 22 H 0.149 0.851 23 H 0.228 0.772 24 H 0.097 0.903 25 H 0.131 0.869 26 H 0.082 0.918 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.910 -0.442 1.909 6.226 hybrid contribution -1.073 -1.632 -0.098 1.956 sum 4.837 -2.074 1.811 5.566 Atomic orbital electron populations 1.19615 0.90126 0.98458 0.99788 1.19538 0.95333 0.91017 1.18436 1.20349 0.88637 0.97980 1.10541 1.23696 0.98963 0.87002 1.28443 1.83325 0.92795 1.06972 1.87332 1.24630 1.03078 0.93812 1.17773 1.19795 0.82476 0.98746 1.01211 1.20725 1.03979 0.86486 1.03727 1.43380 1.05300 1.05836 1.55828 1.18520 0.77165 0.94638 0.99070 1.18424 1.13704 0.92863 1.27765 0.90543 1.26386 0.95843 1.01525 0.92816 1.70046 1.24831 1.37972 1.12477 0.85301 0.78146 0.77407 0.79148 1.18771 1.19490 1.18441 0.93362 0.94762 0.93659 0.85136 0.77162 0.90297 0.86900 0.91791 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -1.09 8.58 71.24 0.61 -0.48 15 2 C -0.24 -12.75 5.80 -19.52 -0.11 -12.87 15 3 C -0.14 -7.18 10.85 22.60 0.25 -6.94 15 4 C -0.17 -8.26 7.86 84.42 0.66 -7.59 15 5 S 0.04 1.62 23.37 -56.49 -1.32 0.30 15 6 C -0.26 -9.10 10.80 67.75 0.73 -8.37 15 7 C 0.09 3.62 6.75 41.60 0.28 3.90 15 8 C -0.09 -3.02 9.93 71.23 0.71 -2.31 15 9 N -0.43 -21.68 3.19 -328.22 -1.05 -22.72 15 10 C 0.21 11.73 6.40 38.52 0.25 11.97 15 11 C -0.49 -25.99 8.37 23.00 0.19 -25.79 15 12 H 0.08 3.86 6.35 -2.91 -0.02 3.84 15 13 C 0.05 2.46 4.21 85.14 0.36 2.82 15 14 N -0.83 -42.87 10.55 21.80 0.23 -42.64 15 15 Si 0.98 37.74 29.60 68.60 2.03 39.77 15 16 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 17 H -0.27 -9.97 7.11 99.48 0.71 -9.27 15 18 H -0.26 -9.59 7.11 99.48 0.71 -8.88 15 19 H 0.05 2.39 7.06 -2.39 -0.02 2.38 15 20 H 0.03 1.66 7.24 -2.39 -0.02 1.64 15 21 H 0.04 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.13 5.89 8.06 -2.91 -0.02 5.87 15 23 H 0.21 5.35 8.06 -2.91 -0.02 5.33 15 24 H 0.08 2.55 8.14 -2.39 -0.02 2.53 15 25 H 0.11 2.73 8.10 -2.39 -0.02 2.71 15 26 H 0.06 2.39 5.98 -2.39 -0.01 2.38 15 27 H 0.28 13.52 8.31 -92.71 -0.77 12.75 15 Total: -1.00 -62.10 243.00 5.00 -57.10 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 1.18 Total: 13.83 kcal Atomic # 6 Polarization: -49.58 SS G_CDS: 3.92 Total: -45.65 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.82 Total: -65.36 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.32 Total: 0.30 kcal Total: -62.10 5.00 -57.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259484031.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.697 kcal (2) G-P(sol) polarization free energy of solvation -62.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds