Wall clock time and date at job start Mon Mar 30 2020 02:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33763 * 126.91077 * 2 1 4 4 N 1.20816 * 111.97624 * 180.02562 * 3 2 1 5 5 C 1.29926 * 112.08065 * 359.70301 * 4 3 2 6 6 C 1.37088 * 126.90370 * 180.02562 * 2 1 3 7 7 C 1.47616 * 128.22596 * 359.97168 * 6 2 1 8 8 N 1.31861 * 126.44486 * 179.97438 * 7 6 2 9 9 C 1.35555 * 105.51323 * 180.02562 * 8 7 6 10 10 C 1.41771 * 126.44204 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00183 * 359.97438 * 10 9 8 12 12 C 1.39930 * 120.00445 * 179.97438 * 10 9 8 13 13 N 1.30768 * 119.99935 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00483 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46946 * 90.00071 * 14 12 10 16 16 H 1.48494 * 109.47064 * 210.00265 * 14 12 10 17 17 H 1.48497 * 109.46693 * 330.00450 * 14 12 10 18 18 N 1.31917 * 107.12267 * 0.02562 * 9 8 7 19 19 O 1.21273 * 110.14244 * 359.97438 * 18 9 8 20 20 H 1.09001 * 109.46902 * 269.97653 * 1 2 3 21 21 H 1.09001 * 109.47377 * 29.96783 * 1 2 3 22 22 H 1.08997 * 109.47837 * 149.97503 * 1 2 3 23 23 H 1.07999 * 126.89580 * 180.31307 * 5 4 3 24 24 H 0.96994 * 119.99806 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3103 1.0695 0.0000 4 7 3.4777 0.7582 -0.0005 5 6 3.6393 -0.5310 0.0053 6 6 2.3301 -1.0962 -0.0005 7 6 1.9513 -2.5229 -0.0006 8 7 2.7755 -3.5522 -0.0015 9 6 1.9825 -4.6516 -0.0017 10 6 2.4149 -6.0018 -0.0022 11 1 3.4703 -6.2309 -0.0028 12 6 1.4742 -7.0378 -0.0018 13 7 0.1963 -6.7605 -0.0016 14 14 2.0439 -8.8169 -0.0017 15 1 2.1951 -9.2880 1.3985 16 1 1.0400 -9.6581 -0.7014 17 1 3.3495 -8.9185 -0.7019 18 7 0.7328 -4.2292 -0.0015 19 8 0.7019 -3.0168 -0.0006 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3634 0.8903 -0.5133 22 1 -0.3634 -0.8897 -0.5142 23 1 4.5769 -1.0669 0.0110 24 1 -0.4558 -7.4786 -0.0017 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259522561.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:49 Heat of formation + Delta-G solvation = 117.258453 kcal Electronic energy + Delta-G solvation = -14252.662277 eV Core-core repulsion = 11558.738776 eV Total energy + Delta-G solvation = -2693.923501 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.81035 -43.32136 -34.68708 -34.45876 -33.09508 -32.85951 -30.08735 -27.63339 -26.62822 -24.17801 -22.15587 -21.61424 -20.35536 -17.71093 -17.56877 -16.79395 -16.19563 -15.84282 -15.05318 -14.42231 -13.71463 -13.31160 -13.13199 -13.00374 -12.30440 -11.48278 -11.37180 -11.30351 -10.95567 -10.86226 -10.48038 -10.28697 -10.22194 -9.70573 -9.23504 -8.99323 -7.94544 -6.70757 -4.73047 1.29357 2.05740 2.97503 3.04281 3.08092 3.13230 3.29245 3.92583 4.00290 4.04475 4.42750 4.68783 4.98542 5.24520 5.46778 5.52324 5.68383 5.76480 6.05426 6.13294 6.45967 6.76866 7.18516 7.58406 8.22199 8.33416 8.40043 8.76441 10.18460 10.31970 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.067994 B = 0.006896 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.703379 B = 4059.418012 C = 4455.977039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.003 4.003 3 O 0.096 5.904 4 N -0.371 5.371 5 C 0.038 3.962 6 C -0.110 4.110 7 C 0.183 3.817 8 N -0.501 5.501 9 C 0.294 3.706 10 C -0.432 4.432 11 H 0.094 0.906 12 C 0.069 3.931 13 N -0.772 5.772 14 Si 0.926 3.074 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.261 1.261 18 N -0.417 5.417 19 O 0.031 5.969 20 H 0.093 0.907 21 H 0.085 0.915 22 H 0.102 0.898 23 H 0.200 0.800 24 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 8.614 0.016 8.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.070 4.070 3 O 0.036 5.964 4 N -0.077 5.077 5 C -0.143 4.143 6 C -0.116 4.116 7 C -0.036 4.036 8 N -0.243 5.243 9 C 0.042 3.958 10 C -0.473 4.473 11 H 0.112 0.888 12 C -0.152 4.152 13 N -0.401 5.401 14 Si 0.750 3.250 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.185 1.185 18 N -0.144 5.144 19 O -0.013 6.013 20 H 0.111 0.889 21 H 0.104 0.896 22 H 0.120 0.880 23 H 0.217 0.783 24 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.071 8.957 0.005 8.957 hybrid contribution 0.029 -1.607 0.023 1.607 sum 0.100 7.350 0.028 7.351 Atomic orbital electron populations 1.20467 0.83049 1.05156 1.04659 1.24702 0.96293 0.85158 1.00825 1.84678 1.11422 1.32569 1.67772 1.73700 0.96807 1.16668 1.20524 1.24995 0.99433 0.89190 1.00658 1.18052 0.92947 0.88527 1.12087 1.24432 0.83876 0.92314 1.02975 1.72266 1.31438 0.97688 1.22930 1.22220 0.82993 0.94443 0.96098 1.18446 0.94980 0.85425 1.48488 0.88830 1.25858 0.94402 1.01858 0.93067 1.69863 1.01326 1.34788 1.34087 0.86022 0.79461 0.80353 0.79174 1.19387 1.20156 1.18470 1.75562 1.19664 0.86212 1.32950 1.85342 1.29275 1.18281 1.68379 0.88884 0.89646 0.87989 0.78347 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.16 36.00 0.37 -0.48 14 2 C 0.00 -0.04 7.55 -34.73 -0.26 -0.30 14 3 O 0.10 1.41 11.15 17.93 0.20 1.61 14 4 N -0.37 -5.90 12.02 30.68 0.37 -5.53 14 5 C 0.04 0.62 12.21 -16.68 -0.20 0.42 14 6 C -0.11 -2.00 6.30 -104.81 -0.66 -2.66 14 7 C 0.18 4.20 8.24 -13.85 -0.11 4.08 14 8 N -0.50 -13.04 11.63 -11.42 -0.13 -13.17 14 9 C 0.29 8.42 7.67 -157.68 -1.21 7.21 14 10 C -0.43 -12.14 9.52 -37.60 -0.36 -12.50 14 11 H 0.09 2.49 7.85 -52.48 -0.41 2.08 14 12 C 0.07 1.83 5.49 -17.37 -0.10 1.74 14 13 N -0.77 -21.33 11.97 55.54 0.67 -20.67 14 14 Si 0.93 19.26 29.56 -169.99 -5.02 14.24 14 15 H -0.27 -5.47 7.11 56.52 0.40 -5.07 14 16 H -0.28 -5.58 7.11 56.52 0.40 -5.18 14 17 H -0.26 -5.30 7.11 56.52 0.40 -4.90 14 18 N -0.42 -11.88 10.46 30.31 0.32 -11.56 14 19 O 0.03 0.75 10.00 16.25 0.16 0.92 14 20 H 0.09 0.91 8.14 -51.93 -0.42 0.49 14 21 H 0.08 0.69 8.14 -51.93 -0.42 0.27 14 22 H 0.10 1.29 7.02 -51.93 -0.36 0.93 14 23 H 0.20 2.95 8.06 -52.49 -0.42 2.53 14 24 H 0.28 6.97 8.29 -40.82 -0.34 6.63 14 LS Contribution 232.77 15.07 3.51 3.51 Total: -1.00 -31.74 232.77 -3.65 -35.39 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -1.18 Total: -2.24 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -2.54 Total: -2.49 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 1.22 Total: -50.93 kcal Atomic # 8 Polarization: 2.17 SS G_CDS: 0.36 Total: 2.53 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.74 -3.65 -35.39 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522561.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.648 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds