Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33763 * 126.91077 * 2 1 4 4 N 1.20816 * 111.97624 * 180.02562 * 3 2 1 5 5 C 1.29926 * 112.08065 * 359.70301 * 4 3 2 6 6 C 1.37088 * 126.90370 * 180.02562 * 2 1 3 7 7 C 1.47616 * 128.22596 * 359.97168 * 6 2 1 8 8 N 1.31861 * 126.44486 * 179.97438 * 7 6 2 9 9 C 1.35555 * 105.51323 * 180.02562 * 8 7 6 10 10 C 1.41771 * 126.44204 * 180.02562 * 9 8 7 11 11 H 1.08003 * 120.00183 * 359.97438 * 10 9 8 12 12 C 1.39930 * 120.00445 * 179.97438 * 10 9 8 13 13 N 1.30768 * 119.99935 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00483 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46946 * 90.00071 * 14 12 10 16 16 H 1.48494 * 109.47064 * 210.00265 * 14 12 10 17 17 H 1.48497 * 109.46693 * 330.00450 * 14 12 10 18 18 N 1.31917 * 107.12267 * 0.02562 * 9 8 7 19 19 O 1.21273 * 110.14244 * 359.97438 * 18 9 8 20 20 H 1.09001 * 109.46902 * 269.97653 * 1 2 3 21 21 H 1.09001 * 109.47377 * 29.96783 * 1 2 3 22 22 H 1.08997 * 109.47837 * 149.97503 * 1 2 3 23 23 H 1.07999 * 126.89580 * 180.31307 * 5 4 3 24 24 H 0.96994 * 119.99806 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3103 1.0695 0.0000 4 7 3.4777 0.7582 -0.0005 5 6 3.6393 -0.5310 0.0053 6 6 2.3301 -1.0962 -0.0005 7 6 1.9513 -2.5229 -0.0006 8 7 2.7755 -3.5522 -0.0015 9 6 1.9825 -4.6516 -0.0017 10 6 2.4149 -6.0018 -0.0022 11 1 3.4703 -6.2309 -0.0028 12 6 1.4742 -7.0378 -0.0018 13 7 0.1963 -6.7605 -0.0016 14 14 2.0439 -8.8169 -0.0017 15 1 2.1951 -9.2880 1.3985 16 1 1.0400 -9.6581 -0.7014 17 1 3.3495 -8.9185 -0.7019 18 7 0.7328 -4.2292 -0.0015 19 8 0.7019 -3.0168 -0.0006 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3634 0.8903 -0.5133 22 1 -0.3634 -0.8897 -0.5142 23 1 4.5769 -1.0669 0.0110 24 1 -0.4558 -7.4786 -0.0017 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259522561.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = 94.183820 kcal Electronic energy + Delta-G solvation = -14253.662868 eV Core-core repulsion = 11558.738776 eV Total energy + Delta-G solvation = -2694.924092 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -46.12474 -45.30805 -36.57449 -36.03963 -34.78077 -34.29538 -31.94172 -28.81091 -28.68842 -25.73680 -23.97852 -23.24391 -21.99108 -19.43384 -18.88591 -18.27436 -18.15636 -17.77836 -16.67413 -16.15194 -15.21721 -14.80385 -14.43555 -14.03203 -13.44072 -13.28505 -13.13587 -13.06313 -12.60753 -12.56537 -12.19237 -12.00443 -11.96489 -11.26233 -11.21279 -10.70458 -9.75075 -8.67270 -6.83305 -0.10528 0.65313 1.28509 1.38517 1.55581 1.60953 1.71151 2.07644 2.19418 2.48722 2.96387 3.18684 3.46381 3.59623 4.16248 4.29400 4.43245 4.65432 4.70090 4.83695 4.95031 5.16687 5.21943 5.61867 6.14110 6.36809 6.72130 7.06949 8.24046 8.37453 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.067994 B = 0.006896 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.703379 B = 4059.418012 C = 4455.977039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.042 3.958 3 O 0.110 5.890 4 N -0.373 5.373 5 C 0.042 3.958 6 C -0.161 4.161 7 C 0.210 3.790 8 N -0.531 5.531 9 C 0.266 3.734 10 C -0.468 4.468 11 H 0.095 0.905 12 C 0.023 3.977 13 N -0.809 5.809 14 Si 1.010 2.990 15 H -0.259 1.259 16 H -0.264 1.264 17 H -0.254 1.254 18 N -0.455 5.455 19 O 0.033 5.967 20 H 0.115 0.885 21 H 0.126 0.874 22 H 0.087 0.913 23 H 0.209 0.791 24 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 9.209 0.061 9.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.026 4.026 3 O 0.050 5.950 4 N -0.080 5.080 5 C -0.139 4.139 6 C -0.168 4.168 7 C -0.009 4.009 8 N -0.273 5.273 9 C 0.014 3.986 10 C -0.508 4.508 11 H 0.114 0.886 12 C -0.194 4.194 13 N -0.438 5.438 14 Si 0.828 3.172 15 H -0.183 1.183 16 H -0.188 1.188 17 H -0.177 1.177 18 N -0.183 5.183 19 O -0.009 6.009 20 H 0.133 0.867 21 H 0.144 0.856 22 H 0.106 0.894 23 H 0.226 0.774 24 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.082 9.600 0.050 9.601 hybrid contribution 0.035 -1.538 0.010 1.538 sum -0.046 8.063 0.061 8.063 Atomic orbital electron populations 1.20756 0.80213 1.06424 1.06355 1.25276 0.97493 0.83931 0.95868 1.84710 1.11114 1.32070 1.67058 1.73709 0.97267 1.16055 1.20949 1.25146 0.99391 0.89313 1.00012 1.18058 0.94784 0.86942 1.17008 1.25003 0.82831 0.93759 0.99332 1.72228 1.31891 0.97927 1.25213 1.22669 0.83652 0.95563 0.96680 1.18879 0.95696 0.86257 1.50016 0.88644 1.26981 0.94110 1.06748 0.91595 1.69953 1.02747 1.36878 1.34231 0.84800 0.79262 0.73425 0.79700 1.18334 1.18835 1.17722 1.75494 1.20097 0.87719 1.34969 1.85253 1.29727 1.17143 1.68804 0.86717 0.85578 0.89448 0.77438 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 10.16 71.24 0.72 -0.82 14 2 C 0.04 1.13 7.55 25.41 0.19 1.32 14 3 O 0.11 2.90 11.15 74.34 0.83 3.73 14 4 N -0.37 -11.08 12.02 -57.94 -0.70 -11.78 14 5 C 0.04 1.34 12.21 86.06 1.05 2.39 14 6 C -0.16 -5.71 6.30 -19.99 -0.13 -5.84 14 7 C 0.21 9.73 8.24 87.21 0.72 10.45 14 8 N -0.53 -28.43 11.63 -305.24 -3.55 -31.98 14 9 C 0.27 15.75 7.67 135.01 1.04 16.78 14 10 C -0.47 -27.00 9.52 23.55 0.22 -26.78 14 11 H 0.10 5.23 7.85 -2.91 -0.02 5.21 14 12 C 0.02 1.24 5.49 85.26 0.47 1.71 14 13 N -0.81 -45.44 11.97 21.82 0.26 -45.18 14 14 Si 1.01 39.32 29.56 68.60 2.03 41.35 14 15 H -0.26 -9.61 7.11 99.48 0.71 -8.90 14 16 H -0.26 -9.66 7.11 99.48 0.71 -8.95 14 17 H -0.25 -9.49 7.11 99.48 0.71 -8.78 14 18 N -0.45 -26.66 10.46 -59.63 -0.62 -27.28 14 19 O 0.03 1.66 10.00 68.20 0.68 2.35 14 20 H 0.11 1.84 8.14 -2.39 -0.02 1.82 14 21 H 0.13 1.46 8.14 -2.39 -0.02 1.44 14 22 H 0.09 2.05 7.02 -2.39 -0.02 2.03 14 23 H 0.21 6.05 8.06 -2.91 -0.02 6.03 14 24 H 0.29 14.48 8.29 -92.71 -0.77 13.71 14 Total: -1.00 -70.46 232.77 4.47 -66.00 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 1.25 Total: 3.59 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 4.29 Total: -0.78 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -4.61 Total: -116.22 kcal Atomic # 8 Polarization: 4.56 SS G_CDS: 1.51 Total: 6.07 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -70.46 4.47 -66.00 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522561.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.180 kcal (2) G-P(sol) polarization free energy of solvation -70.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds