Wall clock time and date at job start Mon Mar 30 2020 02:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34705 * 126.08722 * 2 1 4 4 O 1.34647 * 107.24010 * 180.02562 * 3 2 1 5 5 C 1.34424 * 107.68400 * 0.02562 * 4 3 2 6 6 C 1.48023 * 125.70911 * 179.97438 * 5 4 3 7 7 N 1.31393 * 126.22791 * 180.02562 * 6 5 4 8 8 O 1.21264 * 110.50486 * 179.97438 * 7 6 5 9 9 C 1.34754 * 109.79412 * 0.02562 * 8 7 6 10 10 C 1.40382 * 126.66244 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99963 * 179.97438 * 10 9 8 12 12 C 1.40421 * 120.00085 * 359.96864 * 10 9 8 13 13 N 1.30528 * 120.00123 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00152 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47087 * 59.99695 * 14 12 10 16 16 H 1.48503 * 109.47323 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46896 * 300.00312 * 14 12 10 18 18 N 1.33146 * 106.67374 * 359.75421 * 9 8 7 19 19 N 1.31133 * 108.58015 * 359.97438 * 5 4 3 20 20 H 1.09002 * 109.47114 * 269.95293 * 1 2 3 21 21 H 1.09000 * 109.47065 * 29.95127 * 1 2 3 22 22 H 1.09004 * 109.47471 * 149.94898 * 1 2 3 23 23 H 1.07997 * 126.38021 * 0.02562 * 3 2 1 24 24 H 0.97004 * 120.00002 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3004 1.0886 0.0000 4 8 3.5747 0.6536 -0.0006 5 6 3.5474 -0.6904 -0.0015 6 6 4.7316 -1.5785 -0.0029 7 7 4.7168 -2.8924 -0.0043 8 8 5.8477 -3.3299 -0.0057 9 6 6.7308 -2.3120 -0.0048 10 6 8.1307 -2.4168 -0.0064 11 1 8.7390 -1.5244 -0.0059 12 6 8.7401 -3.6819 -0.0086 13 7 8.0049 -4.7605 -0.0096 14 14 10.6029 -3.8214 -0.0100 15 1 11.1496 -3.1619 1.2030 16 1 10.9920 -5.2545 -0.0129 17 1 11.1479 -3.1584 -1.2219 18 7 6.0177 -1.1876 -0.0081 19 7 2.2962 -1.0829 -0.0009 20 1 -0.3633 -0.0008 1.0277 21 1 -0.3633 0.8904 -0.5131 22 1 -0.3634 -0.8895 -0.5146 23 1 1.9751 2.1184 0.0004 24 1 8.4259 -5.6344 -0.0108 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259629419.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:07 Heat of formation + Delta-G solvation = 45.232456 kcal Electronic energy + Delta-G solvation = -14038.047532 eV Core-core repulsion = 11341.000749 eV Total energy + Delta-G solvation = -2697.046783 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.32306 -44.43453 -36.39039 -36.19176 -35.96006 -33.30897 -31.92520 -28.67441 -28.47602 -25.67321 -23.93192 -22.54493 -22.15545 -20.16188 -18.36985 -18.17267 -17.60159 -17.43263 -16.94393 -15.98201 -15.58488 -14.97298 -14.18596 -13.99789 -13.75057 -13.51903 -13.10508 -13.04381 -12.74059 -12.41551 -12.00541 -12.00309 -11.74155 -11.59402 -11.31654 -10.69740 -9.63457 -9.01408 -7.22289 -0.14417 0.91193 1.25743 1.33896 1.42862 1.62505 1.69727 2.09174 2.15499 2.55691 2.93992 3.09445 3.69014 3.75702 4.09447 4.38029 4.69602 4.81383 4.82075 4.87274 4.89308 5.06075 5.35533 5.65718 5.91017 6.07276 6.33904 6.57127 7.94289 8.06092 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.090478 B = 0.006147 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.394731 B = 4554.084798 C = 4848.335160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.039 4.039 3 C -0.050 4.050 4 O -0.193 6.193 5 C 0.252 3.748 6 C 0.229 3.771 7 N -0.438 5.438 8 O 0.036 5.964 9 C 0.271 3.729 10 C -0.417 4.417 11 H 0.131 0.869 12 C 0.028 3.972 13 N -0.788 5.788 14 Si 1.027 2.973 15 H -0.249 1.249 16 H -0.259 1.259 17 H -0.249 1.249 18 N -0.620 5.620 19 N -0.470 5.470 20 H 0.089 0.911 21 H 0.114 0.886 22 H 0.067 0.933 23 H 0.280 0.720 24 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.557 7.209 0.012 8.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.161 4.161 3 C -0.121 4.121 4 O -0.076 6.076 5 C 0.048 3.952 6 C -0.043 4.043 7 N -0.171 5.171 8 O -0.014 6.014 9 C 0.085 3.915 10 C -0.453 4.453 11 H 0.149 0.851 12 C -0.195 4.195 13 N -0.415 5.415 14 Si 0.842 3.158 15 H -0.172 1.172 16 H -0.182 1.182 17 H -0.173 1.173 18 N -0.367 5.367 19 N -0.205 5.205 20 H 0.108 0.892 21 H 0.133 0.867 22 H 0.086 0.914 23 H 0.295 0.705 24 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.426 6.352 0.005 8.354 hybrid contribution 0.862 0.255 0.012 0.899 sum -4.564 6.607 0.017 8.030 Atomic orbital electron populations 1.20283 0.82534 1.04867 1.04278 1.22804 1.00454 0.87075 1.05798 1.26222 0.78060 1.03131 1.04645 1.84544 1.32739 1.21772 1.68552 1.21128 0.89832 0.78714 1.05519 1.21489 0.89748 0.88294 1.04746 1.74713 1.03086 1.10597 1.28712 1.85522 1.09375 1.34469 1.71985 1.24757 0.95447 0.79015 0.92261 1.19263 0.84749 0.96925 1.44410 0.85149 1.27476 1.08875 0.92999 0.90176 1.69676 1.42387 1.01031 1.28387 0.84585 0.70823 0.79313 0.81038 1.17240 1.18221 1.17258 1.72458 0.99087 1.26757 1.38440 1.70497 0.99545 1.33302 1.17202 0.89235 0.86738 0.91365 0.70454 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.21 10.43 71.24 0.74 -0.46 14 2 C -0.04 -1.21 7.10 41.42 0.29 -0.92 14 3 C -0.05 -1.37 12.09 67.01 0.81 -0.56 14 4 O -0.19 -7.94 10.79 -7.06 -0.08 -8.01 14 5 C 0.25 12.37 8.25 87.39 0.72 13.09 14 6 C 0.23 13.17 8.11 137.24 1.11 14.28 14 7 N -0.44 -26.45 12.20 -56.04 -0.68 -27.13 14 8 O 0.04 2.21 9.71 64.23 0.62 2.83 14 9 C 0.27 16.03 7.80 85.07 0.66 16.69 14 10 C -0.42 -21.75 9.48 23.32 0.22 -21.53 14 11 H 0.13 6.25 7.85 -2.91 -0.02 6.23 14 12 C 0.03 1.29 5.50 85.42 0.47 1.76 14 13 N -0.79 -39.23 12.05 21.90 0.26 -38.96 14 14 Si 1.03 33.11 29.56 68.60 2.03 35.14 14 15 H -0.25 -7.66 7.11 99.48 0.71 -6.95 14 16 H -0.26 -7.71 7.11 99.48 0.71 -7.01 14 17 H -0.25 -7.67 7.11 99.48 0.71 -6.96 14 18 N -0.62 -36.68 11.64 -305.15 -3.55 -40.23 14 19 N -0.47 -20.87 11.31 -293.10 -3.32 -24.19 14 20 H 0.09 1.46 8.14 -2.39 -0.02 1.45 14 21 H 0.11 1.27 8.14 -2.39 -0.02 1.25 14 22 H 0.07 1.44 8.14 -2.38 -0.02 1.42 14 23 H 0.28 3.62 8.06 -2.91 -0.02 3.60 14 24 H 0.31 13.38 8.29 -92.71 -0.77 12.61 14 Total: -1.00 -74.14 235.97 1.57 -72.57 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.25 Total: 5.63 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 5.03 Total: 22.35 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -7.29 Total: -130.51 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: 0.55 Total: -5.18 kcal Atomic # 14 Polarization: 33.11 SS G_CDS: 2.03 Total: 35.14 kcal Total: -74.14 1.57 -72.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259629419.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.801 kcal (2) G-P(sol) polarization free energy of solvation -74.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds