Wall clock time and date at job start Mon Mar 30 2020 02:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34544 * 126.50603 * 2 1 4 4 C 1.33989 * 108.10927 * 180.02562 * 3 2 1 5 5 N 1.30082 * 109.12378 * 359.72387 * 4 3 2 6 6 C 1.35594 * 126.50223 * 180.02562 * 2 1 3 7 7 C 1.48338 * 126.37956 * 359.97438 * 6 2 1 8 8 N 1.31344 * 126.21201 * 0.02562 * 7 6 2 9 9 O 1.21261 * 110.51662 * 179.73889 * 8 7 6 10 10 C 1.34742 * 109.77517 * 0.02562 * 9 8 7 11 11 C 1.40360 * 126.67394 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00164 * 179.97438 * 11 10 9 13 13 C 1.40430 * 120.00142 * 359.97438 * 11 10 9 14 14 N 1.30533 * 119.99655 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00160 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46909 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46691 * 120.00176 * 15 13 11 18 18 H 1.48500 * 109.47349 * 240.00147 * 15 13 11 19 19 N 1.33187 * 106.65277 * 359.97438 * 10 9 8 20 20 H 1.09004 * 109.47366 * 269.97946 * 1 2 3 21 21 H 1.09002 * 109.47222 * 29.97747 * 1 2 3 22 22 H 1.09002 * 109.47589 * 149.97373 * 1 2 3 23 23 H 1.08000 * 125.43833 * 180.02562 * 4 3 2 24 24 H 0.97001 * 119.99441 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3074 1.0815 0.0000 4 6 3.5788 0.6586 -0.0006 5 7 3.5953 -0.6421 0.0050 6 6 2.3136 -1.0900 -0.0005 7 6 1.8769 -2.5076 -0.0006 8 7 0.6357 -2.9373 -0.0007 9 8 0.6056 -4.1495 -0.0059 10 6 1.8619 -4.6367 -0.0093 11 6 2.2364 -5.9894 -0.0160 12 1 3.2819 -6.2603 -0.0186 13 6 1.2517 -6.9906 -0.0194 14 7 -0.0119 -6.6632 -0.0169 15 14 1.7501 -8.7909 -0.0291 16 1 3.2315 -8.8943 -0.0313 17 1 1.2094 -9.4606 1.1810 18 1 1.2057 -9.4487 -1.2441 19 7 2.6791 -3.5850 -0.0061 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3634 0.8902 -0.5135 22 1 -0.3634 -0.8897 -0.5142 23 1 4.4507 1.2959 -0.0003 24 1 -0.6920 -7.3548 -0.0188 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259653870.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:02 Heat of formation + Delta-G solvation = 42.661630 kcal Electronic energy + Delta-G solvation = -14253.763862 eV Core-core repulsion = 11556.605600 eV Total energy + Delta-G solvation = -2697.158262 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.09645 -44.30139 -36.48770 -36.12027 -35.11956 -33.80029 -32.03550 -28.57806 -28.24661 -25.11491 -23.71853 -22.91598 -21.93967 -19.95140 -18.11576 -18.09844 -17.61314 -17.34851 -16.79578 -15.84657 -15.24123 -15.07971 -14.42368 -13.99484 -13.70609 -13.45604 -13.23823 -13.11178 -12.98591 -12.26247 -11.94956 -11.92740 -11.59726 -11.52024 -11.05906 -10.57222 -9.59261 -8.98224 -7.13870 0.13607 0.90762 1.25457 1.41472 1.63117 1.65141 1.71702 2.16125 2.31273 2.79774 3.00583 3.17842 3.49627 3.64758 4.17341 4.40509 4.51643 4.56323 4.86840 4.91827 4.97716 5.19952 5.40208 5.82319 6.01639 6.19695 6.41262 6.64068 8.03438 8.18529 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.067959 B = 0.006977 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.916227 B = 4012.030251 C = 4408.791615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.006 3.994 3 O -0.195 6.195 4 C 0.195 3.805 5 N -0.508 5.508 6 C 0.022 3.978 7 C 0.232 3.768 8 N -0.464 5.464 9 O 0.023 5.977 10 C 0.271 3.729 11 C -0.429 4.429 12 H 0.120 0.880 13 C 0.029 3.971 14 N -0.791 5.791 15 Si 1.024 2.976 16 H -0.250 1.250 17 H -0.255 1.255 18 H -0.254 1.254 19 N -0.627 5.627 20 H 0.097 0.903 21 H 0.114 0.886 22 H 0.081 0.919 23 H 0.314 0.686 24 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.506 7.074 -0.022 7.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.052 4.052 3 O -0.082 6.082 4 C -0.033 4.033 5 N -0.236 5.236 6 C -0.095 4.095 7 C -0.039 4.039 8 N -0.199 5.199 9 O -0.021 6.021 10 C 0.083 3.917 11 C -0.466 4.466 12 H 0.138 0.862 13 C -0.193 4.193 14 N -0.418 5.418 15 Si 0.840 3.160 16 H -0.173 1.173 17 H -0.179 1.179 18 H -0.178 1.178 19 N -0.372 5.372 20 H 0.115 0.885 21 H 0.132 0.868 22 H 0.100 0.900 23 H 0.328 0.672 24 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.541 7.304 -0.014 7.324 hybrid contribution -0.268 -0.486 0.010 0.555 sum 0.273 6.818 -0.004 6.823 Atomic orbital electron populations 1.20471 0.81205 1.05313 1.05039 1.23756 0.95998 0.82859 1.02589 1.84399 1.18705 1.34770 1.70332 1.29315 0.86282 0.90167 0.97518 1.70595 1.22056 1.12174 1.18765 1.18408 0.89770 0.89303 1.12026 1.22497 0.86961 0.93203 1.01267 1.74461 1.20046 0.93625 1.31722 1.85438 1.31206 1.13072 1.72419 1.24794 0.78236 0.96733 0.91911 1.19177 0.97158 0.84563 1.45713 0.86197 1.27393 0.93476 1.08211 0.90237 1.69680 1.02606 1.40117 1.29361 0.84543 0.80327 0.71369 0.79770 1.17325 1.17853 1.17848 1.72472 1.30640 0.96654 1.37440 0.88455 0.86786 0.90016 0.67179 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.90 10.00 71.23 0.71 -1.19 14 2 C 0.01 0.20 7.43 25.07 0.19 0.39 14 3 O -0.20 -5.67 10.74 -1.85 -0.02 -5.69 14 4 C 0.20 5.32 13.21 130.50 1.72 7.04 14 5 N -0.51 -21.19 11.35 -304.76 -3.46 -24.65 14 6 C 0.02 1.04 7.10 40.61 0.29 1.33 14 7 C 0.23 13.11 8.01 137.38 1.10 14.21 14 8 N -0.46 -26.25 10.31 -55.98 -0.58 -26.82 14 9 O 0.02 1.41 9.71 64.36 0.63 2.04 14 10 C 0.27 16.47 7.80 85.06 0.66 17.13 14 11 C -0.43 -23.49 9.48 23.32 0.22 -23.27 14 12 H 0.12 6.23 7.85 -2.91 -0.02 6.21 14 13 C 0.03 1.40 5.50 85.42 0.47 1.87 14 14 N -0.79 -40.00 12.05 21.91 0.26 -39.73 14 15 Si 1.02 34.74 29.56 68.60 2.03 36.77 14 16 H -0.25 -8.27 7.11 99.48 0.71 -7.56 14 17 H -0.25 -8.08 7.11 99.48 0.71 -7.37 14 18 H -0.25 -8.07 7.11 99.48 0.71 -7.37 14 19 N -0.63 -38.47 11.64 -305.02 -3.55 -42.02 14 20 H 0.10 2.65 8.14 -2.38 -0.02 2.63 14 21 H 0.11 2.43 8.14 -2.39 -0.02 2.41 14 22 H 0.08 2.93 6.61 -2.39 -0.02 2.91 14 23 H 0.31 3.72 8.06 -2.91 -0.02 3.69 14 24 H 0.31 13.41 8.29 -92.71 -0.77 12.64 14 Total: -1.00 -76.32 232.29 1.93 -74.39 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.25 Total: 8.20 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 5.36 Total: 17.51 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -7.32 Total: -133.22 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: 0.61 Total: -3.65 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.77 kcal Total: -76.32 1.93 -74.39 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259653870.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.053 kcal (2) G-P(sol) polarization free energy of solvation -76.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds