Wall clock time and date at job start Mon Mar 30 2020 02:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29919 * 126.89806 * 2 1 4 4 O 1.20815 * 112.08618 * 180.02562 * 3 2 1 5 5 C 1.33766 * 111.97106 * 359.76007 * 4 3 2 6 6 C 1.37080 * 106.18511 * 0.38441 * 5 4 3 7 7 C 1.47622 * 128.22536 * 179.91384 * 6 5 4 8 8 N 1.31868 * 126.43743 * 359.69183 * 7 6 5 9 9 C 1.35565 * 105.50569 * 180.02562 * 8 7 6 10 10 C 1.41776 * 126.43442 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00212 * 354.34789 * 10 9 8 12 12 C 1.39944 * 119.99623 * 174.34745 * 10 9 8 13 13 N 1.30762 * 120.00062 * 6.02370 * 12 10 9 14 14 Si 1.86793 * 119.99796 * 186.02075 * 12 10 9 15 15 H 1.48500 * 109.47494 * 94.98064 * 14 12 10 16 16 H 1.48504 * 109.47219 * 214.98596 * 14 12 10 17 17 H 1.48503 * 109.47387 * 334.97864 * 14 12 10 18 18 N 1.31920 * 107.12254 * 0.02562 * 9 8 7 19 19 O 1.21266 * 110.14030 * 0.02562 * 18 9 8 20 20 H 1.08999 * 109.47193 * 269.97337 * 1 2 3 21 21 H 1.09000 * 109.46972 * 29.97526 * 1 2 3 22 22 H 1.09001 * 109.46968 * 149.97337 * 1 2 3 23 23 H 1.07997 * 126.90686 * 180.27168 * 5 4 3 24 24 H 0.96990 * 119.99971 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0390 0.0000 4 8 3.4550 0.7301 -0.0005 5 6 3.6218 -0.5971 0.0043 6 6 2.3632 -1.1403 -0.0007 7 6 1.9841 -2.5670 -0.0002 8 7 2.8083 -3.5964 -0.0005 9 6 2.0151 -4.6958 -0.0004 10 6 2.4474 -6.0460 -0.0002 11 1 3.4984 -6.2765 -0.0921 12 6 1.5120 -7.0801 0.1192 13 7 0.2329 -6.8088 0.1120 14 14 2.0908 -8.8480 0.2889 15 1 2.1507 -9.2135 1.7270 16 1 1.1411 -9.7492 -0.4119 17 1 3.4410 -8.9868 -0.3137 18 7 0.7654 -4.2731 -0.0007 19 8 0.7347 -3.0608 -0.0014 20 1 -0.3633 -0.0005 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5143 23 1 4.5594 -1.1330 0.0091 24 1 -0.4154 -7.5254 0.1951 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259676489.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:53 Heat of formation + Delta-G solvation = 116.354359 kcal Electronic energy + Delta-G solvation = -14237.794078 eV Core-core repulsion = 11543.831372 eV Total energy + Delta-G solvation = -2693.962705 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.82052 -43.33107 -35.00342 -34.57552 -33.23705 -31.91384 -29.74247 -28.50551 -26.63668 -24.10917 -22.09070 -20.85811 -20.70882 -18.20153 -17.52667 -16.82833 -16.19840 -15.83888 -15.01656 -14.37131 -13.79053 -13.20728 -13.17140 -12.87567 -12.32180 -11.54437 -11.40436 -11.11562 -11.01118 -10.76367 -10.49491 -10.25567 -10.16348 -9.65341 -9.26701 -9.07529 -7.98977 -6.71736 -4.73692 1.35452 1.97784 2.96707 3.07756 3.12876 3.21974 3.27732 3.91477 3.91966 3.98995 4.51876 4.58920 4.95817 5.22442 5.59675 5.68002 5.74029 5.80867 5.93091 6.25453 6.45365 6.75695 7.17846 7.54955 8.21278 8.33999 8.39223 8.75513 10.17413 10.31108 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.067217 B = 0.006889 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.461032 B = 4063.584042 C = 4461.854293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.046 3.954 3 N -0.370 5.370 4 O 0.097 5.903 5 C -0.012 4.012 6 C -0.110 4.110 7 C 0.183 3.817 8 N -0.504 5.504 9 C 0.294 3.706 10 C -0.433 4.433 11 H 0.094 0.906 12 C 0.070 3.930 13 N -0.771 5.771 14 Si 0.926 3.074 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.260 1.260 18 N -0.418 5.418 19 O 0.034 5.966 20 H 0.083 0.917 21 H 0.076 0.924 22 H 0.091 0.909 23 H 0.229 0.771 24 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 7.946 0.109 8.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.115 4.115 3 N -0.078 5.078 4 O 0.037 5.963 5 C -0.097 4.097 6 C -0.116 4.116 7 C -0.036 4.036 8 N -0.247 5.247 9 C 0.042 3.958 10 C -0.474 4.474 11 H 0.112 0.888 12 C -0.152 4.152 13 N -0.400 5.400 14 Si 0.750 3.250 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.184 1.184 18 N -0.144 5.144 19 O -0.010 6.010 20 H 0.102 0.898 21 H 0.095 0.905 22 H 0.110 0.890 23 H 0.245 0.755 24 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.795 8.556 0.107 8.743 hybrid contribution 0.193 -1.685 0.112 1.700 sum 1.988 6.871 0.220 7.156 Atomic orbital electron populations 1.20256 0.85252 1.04221 1.03867 1.23689 0.99235 0.87343 1.01271 1.73625 0.89328 1.23884 1.20943 1.84713 1.21343 1.22788 1.67441 1.26134 1.00396 0.82779 1.00359 1.18225 0.92837 0.88937 1.11610 1.24428 0.83968 0.92221 1.02974 1.72263 1.31461 0.97695 1.23241 1.22216 0.82995 0.94419 0.96120 1.18445 0.95421 0.85435 1.48139 0.88787 1.25864 0.94385 1.01802 0.93135 1.69870 1.01461 1.34789 1.33839 0.86009 0.79590 0.80298 0.79109 1.19468 1.20153 1.18420 1.75579 1.19732 0.86277 1.32775 1.85348 1.29262 1.18212 1.68140 0.89805 0.90464 0.89030 0.75470 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.27 36.01 0.37 -0.70 14 2 C 0.05 0.74 7.37 -81.72 -0.60 0.14 14 3 N -0.37 -5.79 12.02 33.73 0.41 -5.39 14 4 O 0.10 1.39 11.15 17.92 0.20 1.59 14 5 C -0.01 -0.17 12.34 30.31 0.37 0.20 14 6 C -0.11 -1.97 6.30 -104.81 -0.66 -2.63 14 7 C 0.18 4.18 8.27 -13.85 -0.11 4.06 14 8 N -0.50 -12.85 11.63 -11.41 -0.13 -12.99 14 9 C 0.29 8.37 7.66 -157.67 -1.21 7.17 14 10 C -0.43 -12.08 9.51 -37.59 -0.36 -12.44 14 11 H 0.09 2.48 7.85 -52.49 -0.41 2.06 14 12 C 0.07 1.83 5.49 -17.37 -0.10 1.74 14 13 N -0.77 -21.34 12.00 55.55 0.67 -20.67 14 14 Si 0.93 19.18 29.56 -169.99 -5.03 14.16 14 15 H -0.27 -5.48 7.11 56.52 0.40 -5.08 14 16 H -0.28 -5.57 7.11 56.52 0.40 -5.17 14 17 H -0.26 -5.24 7.11 56.52 0.40 -4.84 14 18 N -0.42 -11.96 10.48 30.31 0.32 -11.64 14 19 O 0.03 0.85 10.22 16.28 0.17 1.02 14 20 H 0.08 1.04 8.14 -51.93 -0.42 0.62 14 21 H 0.08 0.88 8.14 -51.93 -0.42 0.46 14 22 H 0.09 1.34 7.20 -51.93 -0.37 0.96 14 23 H 0.23 2.57 8.06 -52.49 -0.42 2.15 14 24 H 0.28 6.98 8.29 -40.82 -0.34 6.64 14 LS Contribution 233.29 15.07 3.52 3.52 Total: -1.00 -31.71 233.29 -3.37 -35.08 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -1.19 Total: -2.20 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.30 Total: -2.47 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 1.26 Total: -50.68 kcal Atomic # 8 Polarization: 2.24 SS G_CDS: 0.37 Total: 2.60 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -31.71 -3.37 -35.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259676489.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.437 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds