Wall clock time and date at job start Mon Mar 30 2020 03:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.85838 * 300.69908 * 9 7 2 11 11 C 1.54627 * 110.97069 * 64.49217 * 9 7 2 12 12 C 1.51336 * 104.16949 * 142.89047 * 11 9 7 13 13 O 1.21281 * 124.93270 * 163.73204 * 12 11 9 14 14 N 1.34419 * 110.12962 * 343.79850 * 12 11 9 15 15 C 1.46767 * 111.30172 * 359.55976 * 14 12 11 16 16 H 1.08999 * 110.24448 * 258.02203 * 15 14 12 17 17 C 1.50700 * 110.24557 * 136.02018 * 15 14 12 18 18 C 1.34506 * 125.78931 * 143.95442 * 17 15 14 19 19 C 1.41382 * 106.84087 * 179.97438 * 18 17 15 20 20 C 1.34510 * 106.84183 * 0.02562 * 19 18 17 21 21 O 1.34303 * 108.42028 * 359.73231 * 20 19 18 22 22 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 23 23 H 1.09004 * 110.48591 * 261.59025 * 11 9 7 24 24 H 1.08997 * 110.48842 * 24.23503 * 11 9 7 25 25 H 0.97000 * 124.34963 * 179.54215 * 14 12 11 26 26 H 1.07998 * 126.58079 * 0.03907 * 18 17 15 27 27 H 1.08000 * 126.58145 * 180.02562 * 19 18 17 28 28 H 1.08005 * 125.79291 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6063 -2.5712 0.8874 11 6 0.4364 -2.6735 -1.2911 12 6 0.5430 -4.1512 -1.5998 13 8 -0.1734 -4.7529 -2.3715 14 7 1.5461 -4.7002 -0.8932 15 6 2.2221 -3.6985 -0.0603 16 1 3.1618 -3.3958 -0.5224 17 6 2.4722 -4.2504 1.3195 18 6 3.5517 -4.0017 2.0824 19 6 3.3740 -4.7169 3.2890 20 6 2.1969 -5.3603 3.1910 21 8 1.6524 -5.0696 1.9982 22 1 -0.4850 0.8401 -0.0041 23 1 -0.6041 -2.3907 -1.1311 24 1 0.8736 -2.0832 -2.0964 25 1 1.7915 -5.6379 -0.9289 26 1 4.3923 -3.3751 1.8235 27 1 4.0532 -4.7418 4.1284 28 1 1.7610 -5.9982 3.9457 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259744754.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:13 Heat of formation + Delta-G solvation = -46.733956 kcal Electronic energy + Delta-G solvation = -14866.209938 eV Core-core repulsion = 12268.715536 eV Total energy + Delta-G solvation = -2597.494402 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.43794 -41.06129 -37.70284 -34.90302 -33.84777 -31.85464 -31.26737 -28.01332 -26.38241 -22.65714 -22.53213 -21.48183 -21.14122 -18.94412 -18.60563 -17.42629 -16.83273 -16.74790 -16.40347 -15.90657 -14.98356 -14.63330 -14.30608 -14.02175 -13.76695 -13.61431 -13.30946 -12.87335 -12.74657 -12.51396 -12.20825 -11.67696 -11.39594 -10.82211 -10.73193 -10.47736 -10.24825 -9.24843 -8.15413 -6.27138 0.87241 1.47381 1.50899 1.58017 1.60901 1.80291 2.16994 2.40640 2.50982 3.18034 3.72480 3.84701 4.14980 4.24513 4.34168 4.46149 4.65560 4.80261 5.00422 5.11579 5.24913 5.39689 5.56088 5.70110 5.79123 5.85173 5.96139 6.18562 6.34118 6.80828 7.27606 7.43024 8.94795 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.011692 C = 0.008357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.417892 B = 2394.288137 C = 3349.580081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.018 3.982 3 Si 0.958 3.042 4 H -0.257 1.257 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.525 4.525 8 H 0.077 0.923 9 C 0.056 3.944 10 H 0.016 0.984 11 C -0.126 4.126 12 C 0.520 3.480 13 O -0.589 6.589 14 N -0.711 5.711 15 C 0.220 3.780 16 H 0.123 0.877 17 C -0.029 4.029 18 C -0.204 4.204 19 C -0.219 4.219 20 C -0.052 4.052 21 O -0.195 6.195 22 H 0.263 0.737 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.412 0.588 26 H 0.159 0.841 27 H 0.174 0.826 28 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 -6.755 5.582 11.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.784 3.216 4 H -0.181 1.181 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.563 4.563 8 H 0.095 0.905 9 C 0.037 3.963 10 H 0.034 0.966 11 C -0.167 4.167 12 C 0.308 3.692 13 O -0.470 6.470 14 N -0.365 5.365 15 C 0.116 3.884 16 H 0.140 0.860 17 C -0.080 4.080 18 C -0.224 4.224 19 C -0.238 4.238 20 C -0.119 4.119 21 O -0.091 6.091 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.110 0.890 25 H 0.252 0.748 26 H 0.177 0.823 27 H 0.192 0.808 28 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.241 -6.933 5.083 11.239 hybrid contribution 0.185 0.680 0.163 0.724 sum 7.426 -6.252 5.245 11.034 Atomic orbital electron populations 1.70092 1.07538 1.27697 1.50327 1.25755 0.95516 1.02644 0.94308 0.85487 0.79547 0.79341 0.77213 1.18079 1.21021 1.21267 1.21291 0.93617 0.89831 1.51552 0.90505 1.19579 0.92159 0.92032 0.92518 0.96580 1.22319 1.02803 0.90131 1.01421 1.21521 0.78345 0.91315 0.77985 1.90615 1.47221 1.70155 1.39045 1.46177 1.33817 1.12109 1.44410 1.20583 0.98422 0.87219 0.82207 0.85983 1.22640 0.91266 0.97653 0.96406 1.21835 1.00338 1.04761 0.95468 1.22141 0.99729 1.01785 1.00133 1.24827 0.95640 1.04278 0.87134 1.84020 1.44806 1.53098 1.27224 0.92794 0.91005 0.89002 0.74836 0.82285 0.80817 0.74774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.52 12.63 21.45 0.27 -50.25 15 2 C 0.02 0.91 5.35 84.66 0.45 1.37 15 3 Si 0.96 40.36 29.54 68.60 2.03 42.38 15 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 15 6 H -0.29 -12.14 7.11 99.48 0.71 -11.43 15 7 C -0.52 -25.65 8.41 25.60 0.22 -25.43 15 8 H 0.08 3.51 7.63 -2.91 -0.02 3.48 15 9 C 0.06 2.61 2.51 -10.48 -0.03 2.58 15 10 H 0.02 0.85 7.90 -2.39 -0.02 0.83 15 11 C -0.13 -5.90 5.63 30.60 0.17 -5.73 15 12 C 0.52 22.79 8.43 87.92 0.74 23.53 15 13 O -0.59 -28.85 18.03 -3.03 -0.05 -28.91 15 14 N -0.71 -26.00 5.85 -442.90 -2.59 -28.59 15 15 C 0.22 8.21 3.53 44.70 0.16 8.37 15 16 H 0.12 4.15 7.76 -2.39 -0.02 4.13 15 17 C -0.03 -1.02 6.12 24.83 0.15 -0.86 15 18 C -0.20 -6.26 10.81 22.19 0.24 -6.02 15 19 C -0.22 -5.59 10.91 22.19 0.24 -5.35 15 20 C -0.05 -1.34 12.09 66.97 0.81 -0.53 15 21 O -0.19 -6.69 10.63 -2.52 -0.03 -6.71 15 22 H 0.26 13.85 8.31 -92.71 -0.77 13.08 15 23 H 0.07 3.68 8.08 -2.38 -0.02 3.66 15 24 H 0.09 4.33 7.89 -2.39 -0.02 4.31 15 25 H 0.41 12.92 8.96 -92.71 -0.83 12.09 15 26 H 0.16 4.36 8.06 -2.91 -0.02 4.34 15 27 H 0.17 3.24 8.06 -2.91 -0.02 3.22 15 28 H 0.24 3.77 8.06 -2.91 -0.02 3.75 15 Total: -1.00 -62.54 252.49 3.13 -59.41 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.35 Total: 20.75 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 3.16 Total: -8.08 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -2.32 Total: -78.84 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.08 Total: -35.62 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.38 kcal Total: -62.54 3.13 -59.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744754.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.674 kcal (2) G-P(sol) polarization free energy of solvation -62.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds