Wall clock time and date at job start Mon Mar 30 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 120.00229 * 2 1 4 4 H 1.48504 * 109.46857 * 269.99972 * 3 2 1 5 5 H 1.48490 * 109.46962 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47255 * 149.99921 * 3 2 1 7 7 C 1.39977 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.41742 * 119.99809 * 0.02562 * 7 2 1 10 10 N 1.31865 * 126.58498 * 359.97438 * 9 7 2 11 11 O 1.21280 * 109.89849 * 180.02562 * 10 9 7 12 12 C 1.33796 * 110.33458 * 359.97438 * 11 10 9 13 13 C 1.50701 * 126.28712 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46877 * 269.95484 * 13 12 11 15 15 C 1.34328 * 126.16246 * 124.71292 * 14 13 12 16 16 O 1.34754 * 107.11234 * 179.84311 * 15 14 13 17 17 C 1.33960 * 107.75407 * 0.42414 * 16 15 14 18 18 N 1.30259 * 108.76156 * 359.73356 * 17 16 15 19 19 N 1.30754 * 107.43064 * 0.02562 * 12 11 10 20 20 H 0.97001 * 119.99821 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47009 * 29.95501 * 13 12 11 22 22 H 1.09003 * 109.47433 * 149.95980 * 13 12 11 23 23 H 1.08005 * 126.44571 * 359.97438 * 15 14 13 24 24 H 1.08004 * 125.61821 * 179.70355 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6526 0.6999 6 1 3.5390 1.4401 0.7000 7 6 2.0073 -1.2122 0.0005 8 1 3.0872 -1.2123 0.0001 9 6 1.2986 -2.4397 0.0005 10 7 -0.0114 -2.5909 0.0005 11 8 -0.2907 -3.7711 0.0011 12 6 0.8230 -4.5125 0.0009 13 6 0.8924 -6.0179 0.0008 14 6 0.9168 -6.5197 1.4217 15 6 0.0657 -7.4062 1.9639 16 8 0.4389 -7.5804 3.2470 17 6 1.5008 -6.7959 3.4737 18 7 1.7908 -6.1562 2.3767 19 7 1.8404 -3.6911 0.0008 20 1 -0.4850 0.8401 -0.0004 21 1 0.0196 -6.4218 -0.5122 22 1 1.7977 -6.3400 -0.5138 23 1 -0.7608 -7.8902 1.4648 24 1 2.0291 -6.7079 4.4116 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259750220.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:24 Heat of formation + Delta-G solvation = 82.217722 kcal Electronic energy + Delta-G solvation = -14141.952451 eV Core-core repulsion = 11446.509470 eV Total energy + Delta-G solvation = -2695.442981 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.25525 -43.05059 -35.31931 -34.28486 -33.14987 -31.99357 -29.79787 -27.13712 -26.33509 -22.66438 -21.88403 -21.52115 -20.36673 -17.64038 -17.05500 -16.43318 -15.99186 -15.60164 -15.04693 -14.66652 -14.04415 -13.76116 -13.04337 -12.94445 -12.18385 -11.27188 -11.23895 -11.06830 -10.75093 -10.35686 -10.27004 -10.12566 -9.99959 -9.18247 -9.00628 -8.76774 -8.01945 -6.56013 -4.55573 1.57509 2.75821 2.95212 3.03368 3.11700 3.15290 3.21233 4.03822 4.12953 4.25775 4.39746 5.01445 5.07031 5.34515 5.41978 5.66702 5.81478 5.94389 6.18904 6.37197 6.71828 7.04138 7.33180 7.86175 7.89826 8.38593 8.61146 8.93010 10.39686 10.53488 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.053806 B = 0.006761 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.265826 B = 4140.398085 C = 4319.570229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.069 3.931 3 Si 0.924 3.076 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.433 4.433 8 H 0.091 0.909 9 C 0.288 3.712 10 N -0.424 5.424 11 O 0.012 5.988 12 C 0.119 3.881 13 C 0.067 3.933 14 C -0.004 4.004 15 C -0.070 4.070 16 O -0.210 6.210 17 C 0.164 3.836 18 N -0.462 5.462 19 N -0.501 5.501 20 H 0.276 0.724 21 H 0.103 0.897 22 H 0.110 0.890 23 H 0.217 0.783 24 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 -12.159 3.478 12.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.152 4.152 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.474 4.474 8 H 0.109 0.891 9 C 0.036 3.964 10 N -0.152 5.152 11 O -0.028 6.028 12 C -0.104 4.104 13 C 0.028 3.972 14 C -0.125 4.125 15 C -0.141 4.141 16 O -0.097 6.097 17 C -0.064 4.064 18 N -0.190 5.190 19 N -0.241 5.241 20 H 0.087 0.913 21 H 0.122 0.878 22 H 0.128 0.872 23 H 0.234 0.766 24 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.051 -10.988 3.444 11.515 hybrid contribution -0.165 0.297 0.193 0.391 sum -0.217 -10.692 3.637 11.295 Atomic orbital electron populations 1.69881 1.07153 1.28547 1.34884 1.25844 0.94969 1.01082 0.93265 0.86066 0.80051 0.80046 0.79042 1.19486 1.20301 1.18551 1.18407 0.94182 0.86238 1.48576 0.89110 1.22455 0.86022 0.91669 0.96235 1.75564 1.16135 0.90243 1.33273 1.85187 1.34684 1.13997 1.68972 1.27525 0.84037 0.96583 1.02226 1.18010 1.04947 0.84496 0.89774 1.21518 0.94787 0.98846 0.97319 1.24766 1.02967 1.04193 0.82143 1.84463 1.41245 1.54995 1.28949 1.28150 0.87696 0.90160 1.00349 1.70456 1.26208 1.22817 0.99544 1.72187 1.29266 1.00724 1.21949 0.91293 0.87829 0.87175 0.76638 0.73653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.66 11.98 55.55 0.67 -22.00 14 2 C 0.07 1.92 5.50 -17.36 -0.10 1.83 14 3 Si 0.92 20.33 29.56 -169.99 -5.02 15.30 14 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 14 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 14 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 14 7 C -0.43 -12.91 9.52 -37.59 -0.36 -13.27 14 8 H 0.09 2.58 7.85 -52.49 -0.41 2.17 14 9 C 0.29 8.77 7.70 -156.99 -1.21 7.56 14 10 N -0.42 -12.89 10.49 30.27 0.32 -12.57 14 11 O 0.01 0.33 11.28 17.72 0.20 0.53 14 12 C 0.12 2.80 7.70 -12.92 -0.10 2.70 14 13 C 0.07 1.08 6.41 -29.03 -0.19 0.89 14 14 C 0.00 -0.07 6.35 -82.82 -0.53 -0.59 14 15 C -0.07 -0.86 12.06 29.35 0.35 -0.50 14 16 O -0.21 -2.65 10.78 5.38 0.06 -2.59 14 17 C 0.16 2.13 13.23 52.10 0.69 2.82 14 18 N -0.46 -8.16 11.28 -11.18 -0.13 -8.28 14 19 N -0.50 -13.74 11.62 -10.83 -0.13 -13.87 14 20 H 0.28 7.30 8.29 -40.82 -0.34 6.96 14 21 H 0.10 1.21 8.11 -51.93 -0.42 0.79 14 22 H 0.11 1.62 8.14 -51.93 -0.42 1.20 14 23 H 0.22 1.64 8.06 -52.48 -0.42 1.22 14 24 H 0.25 1.96 8.06 -52.48 -0.42 1.53 14 LS Contribution 235.27 15.07 3.55 3.55 Total: -1.00 -37.58 235.27 -3.16 -40.74 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: -1.24 Total: -2.24 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.43 Total: 1.44 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.73 Total: -56.72 kcal Atomic # 8 Polarization: -2.33 SS G_CDS: 0.26 Total: -2.07 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -37.58 -3.16 -40.74 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259750220.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.954 kcal (2) G-P(sol) polarization free energy of solvation -37.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds