Wall clock time and date at job start Mon Mar 30 2020 02:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 120.00229 * 2 1 4 4 H 1.48504 * 109.46857 * 269.99972 * 3 2 1 5 5 H 1.48490 * 109.46962 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47255 * 149.99921 * 3 2 1 7 7 C 1.39977 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.41742 * 119.99809 * 0.02562 * 7 2 1 10 10 N 1.31865 * 126.58498 * 359.97438 * 9 7 2 11 11 O 1.21280 * 109.89849 * 180.02562 * 10 9 7 12 12 C 1.33796 * 110.33458 * 359.97438 * 11 10 9 13 13 C 1.50701 * 126.28712 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46877 * 269.95484 * 13 12 11 15 15 C 1.34328 * 126.16246 * 124.71292 * 14 13 12 16 16 O 1.34754 * 107.11234 * 179.84311 * 15 14 13 17 17 C 1.33960 * 107.75407 * 0.42414 * 16 15 14 18 18 N 1.30259 * 108.76156 * 359.73356 * 17 16 15 19 19 N 1.30754 * 107.43064 * 0.02562 * 12 11 10 20 20 H 0.97001 * 119.99821 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47009 * 29.95501 * 13 12 11 22 22 H 1.09003 * 109.47433 * 149.95980 * 13 12 11 23 23 H 1.08005 * 126.44571 * 359.97438 * 15 14 13 24 24 H 1.08004 * 125.61821 * 179.70355 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6526 0.6999 6 1 3.5390 1.4401 0.7000 7 6 2.0073 -1.2122 0.0005 8 1 3.0872 -1.2123 0.0001 9 6 1.2986 -2.4397 0.0005 10 7 -0.0114 -2.5909 0.0005 11 8 -0.2907 -3.7711 0.0011 12 6 0.8230 -4.5125 0.0009 13 6 0.8924 -6.0179 0.0008 14 6 0.9168 -6.5197 1.4217 15 6 0.0657 -7.4062 1.9639 16 8 0.4389 -7.5804 3.2470 17 6 1.5008 -6.7959 3.4737 18 7 1.7908 -6.1562 2.3767 19 7 1.8404 -3.6911 0.0008 20 1 -0.4850 0.8401 -0.0004 21 1 0.0196 -6.4218 -0.5122 22 1 1.7977 -6.3400 -0.5138 23 1 -0.7608 -7.8902 1.4648 24 1 2.0291 -6.7079 4.4116 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259750220.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:23 Heat of formation + Delta-G solvation = 49.902820 kcal Electronic energy + Delta-G solvation = -14143.353731 eV Core-core repulsion = 11446.509470 eV Total energy + Delta-G solvation = -2696.844260 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.24455 -44.19901 -36.59246 -36.33258 -35.02305 -33.59989 -31.39900 -28.78797 -28.28356 -23.91769 -23.71132 -23.09639 -21.97165 -19.28942 -18.52420 -17.98362 -17.70524 -17.46354 -16.50061 -15.97341 -15.58396 -15.16762 -14.87891 -14.12569 -13.61707 -13.10870 -13.03187 -13.01326 -12.30796 -12.15085 -12.04810 -11.93527 -11.41231 -11.18772 -11.10371 -10.15435 -9.82535 -8.64926 -6.79416 0.58562 1.03051 1.35165 1.35597 1.53707 1.72662 2.05317 2.10416 2.19568 2.71834 3.21093 3.34951 3.64130 3.93630 4.15443 4.52705 4.55794 4.69112 4.90332 4.95596 5.17004 5.24252 5.38407 5.80884 6.16670 6.46782 6.75591 6.86207 8.33912 8.46205 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.053806 B = 0.006761 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.265826 B = 4140.398085 C = 4319.570229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.021 3.979 3 Si 1.011 2.989 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.255 1.255 7 C -0.472 4.472 8 H 0.090 0.910 9 C 0.258 3.742 10 N -0.463 5.463 11 O 0.006 5.994 12 C 0.145 3.855 13 C 0.070 3.930 14 C -0.052 4.052 15 C -0.035 4.035 16 O -0.208 6.208 17 C 0.174 3.826 18 N -0.528 5.528 19 N -0.537 5.537 20 H 0.286 0.714 21 H 0.153 0.847 22 H 0.120 0.880 23 H 0.265 0.735 24 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 -12.957 3.908 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.196 4.196 3 Si 0.829 3.171 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.178 1.178 7 C -0.513 4.513 8 H 0.108 0.892 9 C 0.006 3.994 10 N -0.194 5.194 11 O -0.033 6.033 12 C -0.077 4.077 13 C 0.031 3.969 14 C -0.171 4.171 15 C -0.106 4.106 16 O -0.094 6.094 17 C -0.053 4.053 18 N -0.257 5.257 19 N -0.276 5.276 20 H 0.096 0.904 21 H 0.171 0.829 22 H 0.138 0.862 23 H 0.281 0.719 24 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -0.245 -11.829 3.867 12.447 hybrid contribution -0.144 0.347 0.104 0.390 sum -0.389 -11.481 3.971 12.155 Atomic orbital electron populations 1.69980 1.09122 1.30328 1.34893 1.27024 0.95937 1.05007 0.91648 0.84797 0.78464 0.74037 0.79795 1.18074 1.18773 1.17844 1.18838 0.94517 0.87524 1.50389 0.89175 1.22952 0.86642 0.93062 0.96772 1.75516 1.16466 0.92163 1.35216 1.85080 1.35439 1.13333 1.69479 1.28874 0.82129 0.99194 0.97533 1.18449 1.07801 0.79200 0.91427 1.21561 0.96781 1.01672 0.97130 1.25553 1.01907 1.01758 0.81382 1.84515 1.41036 1.54701 1.29142 1.28935 0.87217 0.88638 1.00527 1.70392 1.28404 1.25348 1.01569 1.72172 1.30713 1.00428 1.24294 0.90367 0.82920 0.86233 0.71928 0.69886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.49 11.98 21.83 0.26 -48.23 14 2 C 0.02 1.17 5.50 85.28 0.47 1.63 14 3 Si 1.01 41.76 29.56 68.60 2.03 43.79 14 4 H -0.26 -9.99 7.11 99.48 0.71 -9.29 14 5 H -0.26 -10.18 7.11 99.48 0.71 -9.47 14 6 H -0.25 -10.14 7.11 99.48 0.71 -9.44 14 7 C -0.47 -29.08 9.52 23.56 0.22 -28.86 14 8 H 0.09 5.32 7.85 -2.92 -0.02 5.29 14 9 C 0.26 16.28 7.70 134.75 1.04 17.32 14 10 N -0.46 -29.07 10.49 -60.20 -0.63 -29.70 14 11 O 0.01 0.34 11.28 73.46 0.83 1.17 14 12 C 0.15 6.86 7.70 88.33 0.68 7.54 14 13 C 0.07 2.13 6.41 29.10 0.19 2.31 14 14 C -0.05 -1.57 6.35 41.26 0.26 -1.31 14 15 C -0.04 -0.74 12.06 66.93 0.81 0.07 14 16 O -0.21 -4.60 10.78 -3.68 -0.04 -4.64 14 17 C 0.17 4.19 13.23 130.48 1.73 5.91 14 18 N -0.53 -18.25 11.28 -304.07 -3.43 -21.68 14 19 N -0.54 -30.32 11.62 -304.61 -3.54 -33.86 14 20 H 0.29 15.25 8.29 -92.71 -0.77 14.48 14 21 H 0.15 3.02 8.11 -2.39 -0.02 3.00 14 22 H 0.12 3.37 8.14 -2.39 -0.02 3.35 14 23 H 0.27 2.54 8.06 -2.91 -0.02 2.51 14 24 H 0.29 3.84 8.06 -2.91 -0.02 3.82 14 Total: -1.00 -86.39 235.27 2.12 -84.27 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.24 Total: 4.26 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 5.39 Total: 4.63 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -7.34 Total: -133.47 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: 0.79 Total: -3.48 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -86.39 2.12 -84.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259750220.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.175 kcal (2) G-P(sol) polarization free energy of solvation -86.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds