Wall clock time and date at job start Mon Mar 30 2020 02:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30579 * 1 3 3 Si 1.86792 * 119.99890 * 2 1 4 4 H 1.48505 * 109.47070 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47149 * 299.99725 * 3 2 1 6 6 H 1.48499 * 109.47441 * 60.00284 * 3 2 1 7 7 C 1.40526 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00309 * 179.97438 * 7 2 1 9 9 C 1.39001 * 120.00351 * 0.02562 * 7 2 1 10 10 N 1.31517 * 126.65020 * 0.32272 * 9 7 2 11 11 N 1.39173 * 112.33372 * 180.18096 * 10 9 7 12 12 C 1.38423 * 124.27919 * 179.78480 * 11 10 9 13 13 N 1.31090 * 125.69616 * 179.65710 * 12 11 10 14 14 C 1.34319 * 108.65130 * 180.02562 * 13 12 11 15 15 C 1.34497 * 107.79002 * 0.02562 * 14 13 12 16 16 O 1.34271 * 125.69943 * 359.70386 * 12 11 10 17 17 C 1.34777 * 111.44086 * 359.51658 * 11 10 9 18 18 O 1.21256 * 127.13879 * 180.23031 * 17 11 10 19 19 C 1.51449 * 126.65380 * 179.97438 * 9 7 2 20 20 H 0.97000 * 120.00486 * 0.02562 * 1 2 3 21 21 H 1.08000 * 126.10443 * 180.02562 * 14 13 12 22 22 H 1.08003 * 126.38213 * 180.02562 * 15 14 13 23 23 H 1.09005 * 110.56321 * 61.42136 * 19 9 7 24 24 H 1.08997 * 110.68826 * 298.63929 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2397 1.6177 0.0000 4 1 3.6998 1.3463 -0.0006 5 1 1.8810 2.3964 -1.2125 6 1 1.8811 2.3964 1.2125 7 6 2.0084 -1.2170 0.0005 8 1 3.0884 -1.2171 0.0001 9 6 1.3134 -2.4208 0.0005 10 7 0.0071 -2.5732 -0.0059 11 7 -0.3691 -3.9131 0.0003 12 6 -1.6811 -4.3545 -0.0001 13 7 -2.0665 -5.6074 -0.0008 14 6 -3.4092 -5.6438 -0.0015 15 6 -3.8547 -4.3747 -0.0018 16 8 -2.7714 -3.5709 -0.0007 17 6 0.7055 -4.7265 0.0008 18 8 0.7058 -5.9391 0.0016 19 6 1.9136 -3.8113 0.0005 20 1 -0.4851 0.8400 -0.0004 21 1 -4.0218 -6.5333 -0.0018 22 1 -4.8873 -4.0582 -0.0020 23 1 2.5136 -3.9693 0.8968 24 1 2.5149 -3.9711 -0.8944 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259756001.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:10 Heat of formation + Delta-G solvation = 49.231556 kcal Electronic energy + Delta-G solvation = -14431.746478 eV Core-core repulsion = 11734.873109 eV Total energy + Delta-G solvation = -2696.873369 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.53887 -39.74659 -36.31045 -34.19588 -33.90550 -31.97258 -28.61355 -27.66942 -26.28636 -22.59391 -21.93424 -20.19518 -19.51921 -17.46195 -16.79558 -16.27436 -15.75057 -15.11354 -14.89633 -14.34763 -13.79216 -13.51867 -13.06589 -12.49583 -12.18172 -11.53991 -11.46641 -11.21568 -11.07231 -10.61622 -10.46376 -9.87428 -9.73787 -9.66481 -8.63835 -8.34522 -7.36580 -6.87484 -4.96722 1.97969 2.65625 2.76123 2.96639 2.97901 3.02447 3.36578 3.75705 3.97037 4.03198 4.97440 4.97680 5.30526 5.45692 5.62164 5.84451 6.09995 6.19491 6.42744 6.62635 6.77122 7.01044 7.40819 7.82193 8.29204 8.36917 8.55052 8.74683 9.59703 10.01950 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.039482 B = 0.008948 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.013597 B = 3128.313704 C = 3822.114797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.720 5.720 2 C 0.066 3.934 3 Si 0.921 3.079 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.405 4.405 8 H 0.099 0.901 9 C 0.199 3.801 10 N -0.356 5.356 11 N -0.372 5.372 12 C 0.475 3.525 13 N -0.512 5.512 14 C -0.024 4.024 15 C -0.119 4.119 16 O -0.192 6.192 17 C 0.492 3.508 18 O -0.502 6.502 19 C -0.155 4.155 20 H 0.284 0.716 21 H 0.180 0.820 22 H 0.210 0.790 23 H 0.116 0.884 24 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.420 0.199 0.006 1.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.162 4.162 3 Si 0.745 3.255 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.445 4.445 8 H 0.117 0.883 9 C 0.040 3.960 10 N -0.184 5.184 11 N -0.186 5.186 12 C 0.180 3.820 13 N -0.251 5.251 14 C -0.164 4.164 15 C -0.191 4.191 16 O -0.077 6.077 17 C 0.280 3.720 18 O -0.374 6.374 19 C -0.197 4.197 20 H 0.096 0.904 21 H 0.197 0.803 22 H 0.227 0.773 23 H 0.134 0.866 24 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.099 -0.506 0.001 2.159 hybrid contribution 0.279 0.867 0.003 0.911 sum -1.820 0.361 0.004 1.855 Atomic orbital electron populations 1.69825 1.07527 1.29465 1.27576 1.26147 0.94971 1.01581 0.93467 0.86031 0.80607 0.80123 0.78772 1.18063 1.19658 1.19652 1.18587 0.94641 0.87574 1.43701 0.88324 1.21477 0.90174 0.91494 0.92849 1.78170 1.13409 0.83718 1.43092 1.46609 0.98232 1.09334 1.64407 1.21095 0.81951 0.82305 0.96665 1.70939 1.11817 1.16137 1.26227 1.23157 0.90481 0.97769 1.05012 1.24699 0.91140 0.89877 1.13420 1.84570 1.13880 1.38017 1.71224 1.21916 0.85834 0.87866 0.76408 1.90687 1.85877 1.12071 1.48744 1.21787 0.96336 0.96141 1.05448 0.90439 0.80310 0.77314 0.86602 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.00 11.94 55.58 0.66 -17.33 14 2 C 0.07 1.50 5.50 -17.22 -0.09 1.41 14 3 Si 0.92 16.62 29.56 -169.99 -5.03 11.60 14 4 H -0.26 -4.45 7.11 56.52 0.40 -4.04 14 5 H -0.27 -4.91 7.11 56.52 0.40 -4.50 14 6 H -0.27 -4.90 7.11 56.52 0.40 -4.50 14 7 C -0.41 -9.36 9.38 -38.44 -0.36 -9.72 14 8 H 0.10 2.00 7.85 -52.49 -0.41 1.59 14 9 C 0.20 4.85 6.99 -82.08 -0.57 4.27 14 10 N -0.36 -9.61 10.34 33.79 0.35 -9.26 14 11 N -0.37 -9.70 3.67 -12.79 -0.05 -9.74 14 12 C 0.47 11.87 8.84 -86.71 -0.77 11.10 14 13 N -0.51 -12.00 10.39 -14.36 -0.15 -12.15 14 14 C -0.02 -0.44 11.88 -17.79 -0.21 -0.65 14 15 C -0.12 -2.05 12.18 29.41 0.36 -1.70 14 16 O -0.19 -4.41 10.80 4.15 0.04 -4.37 14 17 C 0.49 12.06 8.33 -10.56 -0.09 11.97 14 18 O -0.50 -13.07 17.10 5.58 0.10 -12.98 14 19 C -0.15 -3.23 6.87 -28.24 -0.19 -3.43 14 20 H 0.28 6.41 8.29 -40.82 -0.34 6.07 14 21 H 0.18 2.40 8.06 -52.49 -0.42 1.97 14 22 H 0.21 2.44 8.06 -52.48 -0.42 2.02 14 23 H 0.12 2.11 8.14 -51.93 -0.42 1.69 14 24 H 0.12 2.12 8.14 -51.93 -0.42 1.70 14 LS Contribution 233.63 15.07 3.52 3.52 Total: -1.00 -31.75 233.63 -3.72 -35.46 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -1.24 Total: 1.99 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: -1.93 Total: 13.26 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.82 Total: -48.49 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.14 Total: -17.34 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.60 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -31.75 -3.72 -35.46 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259756001.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.695 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds