Wall clock time and date at job start Mon Mar 30 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99716 * 2 1 4 4 H 1.48503 * 109.46994 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47326 * 299.99680 * 3 2 1 6 6 H 1.48506 * 109.47413 * 59.99752 * 3 2 1 7 7 C 1.37877 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46727 * 180.02562 * 9 7 2 11 11 O 1.20759 * 119.99995 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99995 * 179.97438 * 10 9 7 13 13 O 1.42894 * 109.47522 * 179.97438 * 12 10 9 14 14 C 1.35910 * 117.00621 * 180.02562 * 13 12 10 15 15 C 1.39138 * 120.47706 * 180.24394 * 14 13 12 16 16 C 1.38535 * 118.37336 * 180.24194 * 15 14 13 17 17 C 1.38262 * 119.22035 * 359.47237 * 16 15 14 18 18 N 1.31844 * 120.88422 * 0.30388 * 17 16 15 19 19 C 1.31834 * 121.78446 * 359.97438 * 18 17 16 20 20 H 0.97004 * 120.00092 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47051 * 60.00160 * 9 7 2 22 22 H 1.08994 * 109.47217 * 299.99995 * 9 7 2 23 23 H 1.09002 * 109.46741 * 59.99965 * 12 10 9 24 24 H 1.08998 * 109.47583 * 300.00596 * 12 10 9 25 25 H 1.07999 * 120.81005 * 0.02562 * 15 14 13 26 26 H 1.08002 * 120.39207 * 179.75678 * 16 15 14 27 27 H 1.08000 * 119.55595 * 180.28266 * 17 16 15 28 28 H 1.07997 * 119.66066 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 8 3.4176 -3.4238 0.0022 12 6 1.7281 -5.0654 0.0026 13 8 2.8395 -5.9635 0.0032 14 6 2.5584 -7.2932 0.0034 15 6 3.5856 -8.2317 0.0090 16 6 3.2495 -9.5757 0.0039 17 6 1.9151 -9.9377 0.0045 18 7 0.9657 -9.0229 0.0040 19 6 1.2432 -7.7341 0.0033 20 1 -0.4850 0.8401 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8902 23 1 1.1229 -5.2373 -0.8875 24 1 1.1221 -5.2361 0.8924 25 1 4.6196 -7.9200 0.0137 26 1 4.0207 -10.3318 0.0041 27 1 1.6470 -10.9839 0.0052 28 1 0.4382 -7.0141 0.0024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259774496.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:33 Heat of formation + Delta-G solvation = -43.027073 kcal Electronic energy + Delta-G solvation = -13874.027544 eV Core-core repulsion = 11276.693885 eV Total energy + Delta-G solvation = -2597.333660 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.64381 -38.84094 -37.41215 -33.06222 -32.49544 -30.58369 -29.78447 -27.67272 -24.05601 -23.47082 -22.63291 -19.06702 -18.28663 -16.86976 -16.64553 -16.25947 -16.13866 -15.00467 -14.50614 -14.45533 -14.14946 -13.59202 -13.22537 -13.17685 -12.61672 -12.23706 -11.94240 -11.46519 -11.14042 -10.87335 -10.73271 -10.10895 -9.82115 -9.55971 -9.39579 -8.61685 -8.53917 -8.49454 -6.15782 -4.17421 1.00819 1.20812 2.80228 3.04081 3.27623 3.35259 3.43394 3.70909 4.35192 4.41227 4.58854 4.70915 4.85884 4.97735 5.21895 5.21983 5.32691 5.32743 5.43894 5.90050 5.97396 6.31788 6.44664 7.03193 7.17208 7.23401 7.83665 7.84555 8.07874 8.48057 8.92346 9.48609 10.96095 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.080356 B = 0.004907 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.364487 B = 5705.102140 C = 6033.020187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.074 0.926 9 C -0.017 4.017 10 C 0.357 3.643 11 O -0.440 6.440 12 C -0.004 4.004 13 O -0.290 6.290 14 C 0.086 3.914 15 C -0.113 4.113 16 C -0.133 4.133 17 C 0.050 3.950 18 N -0.451 5.451 19 C 0.012 3.988 20 H 0.263 0.737 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.155 0.845 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.263 -16.279 0.010 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.092 0.908 9 C -0.054 4.054 10 C 0.230 3.770 11 O -0.311 6.311 12 C -0.080 4.080 13 O -0.201 6.201 14 C 0.038 3.962 15 C -0.139 4.139 16 C -0.152 4.152 17 C -0.108 4.108 18 N -0.160 5.160 19 C -0.146 4.146 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.160 0.840 26 H 0.157 0.843 27 H 0.173 0.827 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.085 -16.168 0.011 16.302 hybrid contribution 0.840 1.060 -0.001 1.352 sum 2.925 -15.108 0.010 15.388 Atomic orbital electron populations 1.69958 1.06064 1.27054 1.50581 1.25002 0.94926 0.99582 0.94877 0.86374 0.80304 0.82867 0.77604 1.19452 1.20882 1.20886 1.21174 0.94239 0.89300 1.51067 0.90755 1.19572 0.94715 0.90952 1.00154 1.25278 0.91812 0.88979 0.70943 1.90292 1.19570 1.86723 1.34539 1.23810 0.89551 0.90968 1.03641 1.86270 1.34436 1.11901 1.87485 1.20264 0.94720 0.85070 0.96193 1.20993 0.99464 0.91503 1.01986 1.21996 0.98123 0.95633 0.99498 1.22619 0.88835 0.99182 1.00190 1.67509 1.37654 1.01312 1.09513 1.23021 0.94477 0.93587 1.03490 0.92764 0.92479 0.92486 0.88888 0.88880 0.83971 0.84251 0.82732 0.82174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.62 13.29 55.43 0.74 -24.88 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 15 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.52 -14.53 8.92 -34.44 -0.31 -14.84 15 8 H 0.07 2.16 6.76 -52.49 -0.35 1.81 15 9 C -0.02 -0.41 5.40 -29.03 -0.16 -0.57 15 10 C 0.36 7.54 7.23 -29.03 -0.21 7.33 15 11 O -0.44 -10.86 15.60 -13.96 -0.22 -11.08 15 12 C 0.00 -0.06 5.17 36.01 0.19 0.12 15 13 O -0.29 -4.90 9.68 -39.41 -0.38 -5.28 15 14 C 0.09 1.23 6.71 -39.07 -0.26 0.97 15 15 C -0.11 -1.37 10.13 -39.14 -0.40 -1.77 15 16 C -0.13 -1.30 10.11 -39.46 -0.40 -1.70 15 17 C 0.05 0.53 11.18 -17.54 -0.20 0.33 15 18 N -0.45 -6.02 10.35 -13.13 -0.14 -6.15 15 19 C 0.01 0.16 10.22 -17.38 -0.18 -0.01 15 20 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 21 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 22 H 0.06 1.36 8.14 -51.93 -0.42 0.93 15 23 H 0.09 1.24 7.68 -51.93 -0.40 0.84 15 24 H 0.09 1.24 7.68 -51.93 -0.40 0.84 15 25 H 0.14 1.55 8.06 -52.49 -0.42 1.13 15 26 H 0.14 0.89 8.06 -52.49 -0.42 0.47 15 27 H 0.16 1.17 8.06 -52.49 -0.42 0.75 15 28 H 0.16 1.89 6.32 -52.49 -0.33 1.55 15 LS Contribution 257.50 15.07 3.88 3.88 Total: -1.00 -32.28 257.50 -5.89 -38.17 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -2.73 Total: -2.58 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.02 Total: -8.63 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.60 Total: -31.03 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.60 Total: -16.37 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.28 -5.89 -38.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774496.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.861 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds