Wall clock time and date at job start Mon Mar 30 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99716 * 2 1 4 4 H 1.48503 * 109.46994 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47326 * 299.99680 * 3 2 1 6 6 H 1.48506 * 109.47413 * 59.99752 * 3 2 1 7 7 C 1.37877 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46727 * 180.02562 * 9 7 2 11 11 O 1.20759 * 119.99995 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99995 * 179.97438 * 10 9 7 13 13 O 1.42894 * 109.47522 * 179.97438 * 12 10 9 14 14 C 1.35910 * 117.00621 * 180.02562 * 13 12 10 15 15 C 1.39138 * 120.47706 * 180.24394 * 14 13 12 16 16 C 1.38535 * 118.37336 * 180.24194 * 15 14 13 17 17 C 1.38262 * 119.22035 * 359.47237 * 16 15 14 18 18 N 1.31844 * 120.88422 * 0.30388 * 17 16 15 19 19 C 1.31834 * 121.78446 * 359.97438 * 18 17 16 20 20 H 0.97004 * 120.00092 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47051 * 60.00160 * 9 7 2 22 22 H 1.08994 * 109.47217 * 299.99995 * 9 7 2 23 23 H 1.09002 * 109.46741 * 59.99965 * 12 10 9 24 24 H 1.08998 * 109.47583 * 300.00596 * 12 10 9 25 25 H 1.07999 * 120.81005 * 0.02562 * 15 14 13 26 26 H 1.08002 * 120.39207 * 179.75678 * 16 15 14 27 27 H 1.08000 * 119.55595 * 180.28266 * 17 16 15 28 28 H 1.07997 * 119.66066 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 8 3.4176 -3.4238 0.0022 12 6 1.7281 -5.0654 0.0026 13 8 2.8395 -5.9635 0.0032 14 6 2.5584 -7.2932 0.0034 15 6 3.5856 -8.2317 0.0090 16 6 3.2495 -9.5757 0.0039 17 6 1.9151 -9.9377 0.0045 18 7 0.9657 -9.0229 0.0040 19 6 1.2432 -7.7341 0.0033 20 1 -0.4850 0.8401 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8902 23 1 1.1229 -5.2373 -0.8875 24 1 1.1221 -5.2361 0.8924 25 1 4.6196 -7.9200 0.0137 26 1 4.0207 -10.3318 0.0041 27 1 1.6470 -10.9839 0.0052 28 1 0.4382 -7.0141 0.0024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259774496.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:33 Heat of formation + Delta-G solvation = -63.754298 kcal Electronic energy + Delta-G solvation = -13874.926344 eV Core-core repulsion = 11276.693885 eV Total energy + Delta-G solvation = -2598.232459 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.67274 -40.31984 -38.73270 -35.15632 -33.41604 -31.91123 -31.22211 -29.22920 -25.70478 -24.56076 -23.75815 -20.68458 -19.37360 -18.58937 -17.72310 -17.58800 -17.38926 -16.80820 -16.10754 -15.57908 -15.50846 -15.14894 -14.41150 -14.32659 -14.08528 -13.55801 -13.27101 -13.09035 -12.85550 -12.62671 -12.41458 -12.12972 -11.47876 -10.69631 -10.65114 -10.52133 -10.30492 -9.49300 -8.28549 -6.36772 0.13166 0.28039 1.12082 1.37867 1.39507 1.53006 1.87597 2.39536 2.81568 3.06864 3.26828 3.55125 3.70704 3.98710 4.04590 4.13481 4.14988 4.43954 4.60814 4.66719 5.01453 5.10123 5.13569 5.24577 5.55921 5.67805 6.02380 6.19016 6.73357 6.79100 6.95479 7.32690 8.83076 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.080356 B = 0.004907 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.364487 B = 5705.102140 C = 6033.020187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.054 0.946 9 C -0.020 4.020 10 C 0.362 3.638 11 O -0.483 6.483 12 C 0.010 3.990 13 O -0.317 6.317 14 C 0.059 3.941 15 C -0.123 4.123 16 C -0.119 4.119 17 C 0.051 3.949 18 N -0.475 5.475 19 C 0.003 3.997 20 H 0.268 0.732 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.122 0.878 24 H 0.122 0.878 25 H 0.149 0.851 26 H 0.180 0.820 27 H 0.189 0.811 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.282 -17.892 0.010 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.072 0.928 9 C -0.057 4.057 10 C 0.239 3.761 11 O -0.358 6.358 12 C -0.065 4.065 13 O -0.229 6.229 14 C 0.011 3.989 15 C -0.149 4.149 16 C -0.138 4.138 17 C -0.107 4.107 18 N -0.185 5.185 19 C -0.153 4.153 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.139 0.861 24 H 0.139 0.861 25 H 0.167 0.833 26 H 0.197 0.803 27 H 0.206 0.794 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.079 -17.792 0.011 17.913 hybrid contribution 0.845 1.415 -0.001 1.648 sum 2.924 -16.378 0.010 16.637 Atomic orbital electron populations 1.70020 1.07045 1.28126 1.50901 1.25747 0.95828 1.02676 0.94395 0.85454 0.78626 0.79083 0.78241 1.20017 1.19781 1.19793 1.21429 0.93706 0.91669 1.51684 0.92798 1.19493 0.95061 0.91134 1.00041 1.25296 0.90398 0.91220 0.69188 1.90273 1.21020 1.87827 1.36641 1.23506 0.89282 0.87429 1.06290 1.86186 1.34852 1.13344 1.88561 1.20481 0.95897 0.84006 0.98469 1.21337 0.99558 0.92350 1.01683 1.22407 0.98878 0.95292 0.97269 1.23291 0.88933 1.00314 0.98170 1.67563 1.38856 1.01507 1.10582 1.23151 0.94383 0.94121 1.03687 0.92298 0.92476 0.92485 0.86079 0.86071 0.83310 0.80301 0.79441 0.81293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.65 13.29 21.45 0.28 -52.36 15 2 C 0.01 0.71 5.46 84.65 0.46 1.17 15 3 Si 0.96 44.47 29.54 68.60 2.03 46.49 15 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 7 C -0.55 -31.26 8.92 25.60 0.23 -31.03 15 8 H 0.05 3.24 6.76 -2.91 -0.02 3.22 15 9 C -0.02 -0.99 5.40 29.10 0.16 -0.84 15 10 C 0.36 15.53 7.23 29.10 0.21 15.74 15 11 O -0.48 -24.55 15.60 17.63 0.28 -24.27 15 12 C 0.01 0.31 5.17 71.24 0.37 0.67 15 13 O -0.32 -10.59 9.68 -73.45 -0.71 -11.31 15 14 C 0.06 1.62 6.71 22.60 0.15 1.77 15 15 C -0.12 -2.77 10.13 22.56 0.23 -2.54 15 16 C -0.12 -1.94 10.11 22.35 0.23 -1.71 15 17 C 0.05 0.92 11.18 84.70 0.95 1.87 15 18 N -0.48 -11.68 10.35 -195.44 -2.02 -13.70 15 19 C 0.00 0.09 10.22 84.81 0.87 0.96 15 20 H 0.27 14.35 8.31 -92.71 -0.77 13.58 15 21 H 0.06 2.76 8.14 -2.39 -0.02 2.74 15 22 H 0.06 2.75 8.14 -2.39 -0.02 2.73 15 23 H 0.12 3.05 7.68 -2.39 -0.02 3.03 15 24 H 0.12 3.05 7.68 -2.39 -0.02 3.03 15 25 H 0.15 3.05 8.06 -2.91 -0.02 3.02 15 26 H 0.18 1.43 8.06 -2.91 -0.02 1.41 15 27 H 0.19 2.03 8.06 -2.91 -0.02 2.01 15 28 H 0.17 3.73 6.32 -2.91 -0.02 3.71 15 Total: -1.00 -70.40 257.50 4.86 -65.53 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.17 Total: 3.55 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 3.85 Total: -13.93 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -1.74 Total: -66.06 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -0.44 Total: -35.58 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -70.40 4.86 -65.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774496.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.779 kcal (2) G-P(sol) polarization free energy of solvation -70.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds