Wall clock time and date at job start Mon Mar 30 2020 02:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00088 * 2 1 4 4 H 1.48494 * 109.47487 * 270.00224 * 3 2 1 5 5 H 1.48506 * 109.47265 * 30.00026 * 3 2 1 6 6 H 1.48505 * 109.47413 * 149.99823 * 3 2 1 7 7 C 1.37877 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00404 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99759 * 179.97438 * 7 2 1 10 10 C 1.50704 * 109.47077 * 180.02562 * 9 7 2 11 11 N 1.29885 * 124.85221 * 90.00182 * 10 9 7 12 12 C 1.36106 * 108.79537 * 179.97438 * 11 10 9 13 13 C 1.39590 * 133.76861 * 179.97438 * 12 11 10 14 14 C 1.37667 * 119.75866 * 180.02562 * 13 12 11 15 15 C 1.38921 * 120.39949 * 359.97438 * 14 13 12 16 16 F 1.35107 * 119.79070 * 180.02562 * 15 14 13 17 17 C 1.38105 * 120.42259 * 0.02562 * 15 14 13 18 18 C 1.38665 * 119.85383 * 0.02562 * 17 15 14 19 19 O 1.34255 * 124.85325 * 270.00215 * 10 9 7 20 20 H 0.97003 * 119.99939 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47132 * 59.99987 * 9 7 2 22 22 H 1.09005 * 109.47133 * 300.00125 * 9 7 2 23 23 H 1.07991 * 120.12156 * 359.97438 * 13 12 11 24 24 H 1.07994 * 119.79811 * 180.02562 * 14 13 12 25 25 H 1.08002 * 120.07543 * 180.27083 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0139 -2.6149 0.0001 11 7 4.2609 -3.3149 -1.0657 12 6 4.6976 -4.5478 -0.6892 13 6 5.0994 -5.6857 -1.3907 14 6 5.4970 -6.8088 -0.7009 15 6 5.5011 -6.8158 0.6883 16 9 5.8942 -7.9245 1.3528 17 6 5.1060 -5.6966 1.3944 18 6 4.7018 -4.5581 0.7138 19 8 4.2700 -3.3380 1.1019 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6796 0.8894 22 1 3.8745 -0.6808 -0.8905 23 1 5.0976 -5.6854 -2.4706 24 1 5.8084 -7.6894 -1.2430 25 1 5.1155 -5.7068 2.4744 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259808171.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:19 Heat of formation + Delta-G solvation = -13.021058 kcal Electronic energy + Delta-G solvation = -13877.912922 eV Core-core repulsion = 11158.420116 eV Total energy + Delta-G solvation = -2719.492806 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.95987 -42.85365 -37.62306 -34.48147 -33.27447 -30.94100 -30.62938 -28.03681 -24.06233 -23.00652 -22.00592 -20.77946 -18.28044 -17.24700 -17.17740 -16.64514 -16.16098 -15.45137 -14.84644 -14.52711 -14.17167 -13.64764 -13.13061 -12.93487 -12.38528 -12.11467 -12.04479 -11.36992 -11.29580 -10.82768 -10.63086 -10.13318 -10.06175 -9.64988 -8.82779 -8.78296 -8.00979 -6.26551 -4.31031 0.77971 1.19857 2.75424 2.83117 3.19079 3.25494 3.26824 3.66936 4.23450 4.26512 4.29212 4.64394 4.89232 5.01680 5.12244 5.31764 5.61062 5.84491 6.02512 6.09598 6.29440 6.45330 6.58479 6.65927 6.81176 7.29412 8.13515 8.20915 8.72938 9.27205 10.85555 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.064752 B = 0.006152 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.314612 B = 4550.161402 C = 4614.143647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.078 0.922 9 C 0.065 3.935 10 C 0.320 3.680 11 N -0.500 5.500 12 C 0.028 3.972 13 C -0.042 4.042 14 C -0.153 4.153 15 C 0.104 3.896 16 F -0.135 7.135 17 C -0.123 4.123 18 C 0.017 3.983 19 O -0.209 6.209 20 H 0.270 0.730 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.144 0.856 24 H 0.144 0.856 25 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.177 -9.289 0.532 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.704 3.296 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.096 0.904 9 C 0.027 3.973 10 C 0.111 3.889 11 N -0.229 5.229 12 C -0.085 4.085 13 C -0.061 4.061 14 C -0.173 4.173 15 C 0.084 3.916 16 F -0.113 7.113 17 C -0.143 4.143 18 C -0.035 4.035 19 O -0.101 6.101 20 H 0.080 0.920 21 H 0.073 0.927 22 H 0.085 0.915 23 H 0.161 0.839 24 H 0.162 0.838 25 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.945 -8.995 -0.057 14.167 hybrid contribution 0.351 0.382 0.850 0.996 sum 11.296 -8.614 0.793 14.228 Atomic orbital electron populations 1.69863 1.06254 1.27547 1.48700 1.24866 0.94852 0.98984 0.93795 0.86800 0.80376 0.83311 0.79095 1.19572 1.20697 1.18668 1.20627 0.86652 0.95567 1.53895 0.90398 1.18679 0.98380 0.79953 1.00264 1.27480 0.88245 0.96560 0.76633 1.70824 1.20848 1.02300 1.28930 1.20149 1.02720 0.94439 0.91172 1.20071 0.96599 0.89030 1.00361 1.20879 1.04659 0.99835 0.91963 1.16977 1.01799 0.82953 0.89847 1.91502 1.88595 1.50251 1.80994 1.19476 1.04738 0.89291 1.00802 1.19844 1.02348 0.86896 0.94376 1.84616 1.67231 1.20872 1.37371 0.92032 0.92663 0.91528 0.83859 0.83784 0.83863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.96 55.43 0.77 -25.30 15 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 15 3 Si 0.88 19.84 27.47 -169.99 -4.67 15.17 15 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.26 -5.53 6.54 56.52 0.37 -5.16 15 7 C -0.53 -14.53 9.65 -34.44 -0.33 -14.86 15 8 H 0.08 2.38 7.98 -52.49 -0.42 1.96 15 9 C 0.07 1.50 4.67 -29.03 -0.14 1.36 15 10 C 0.32 7.10 7.43 -13.10 -0.10 7.00 15 11 N -0.50 -10.87 11.34 -8.69 -0.10 -10.97 15 12 C 0.03 0.52 7.24 -84.69 -0.61 -0.10 15 13 C -0.04 -0.60 10.09 -39.29 -0.40 -1.00 15 14 C -0.15 -1.88 10.00 -39.54 -0.40 -2.27 15 15 C 0.10 1.39 7.29 -39.38 -0.29 1.11 15 16 F -0.13 -1.72 17.26 2.25 0.04 -1.68 15 17 C -0.12 -1.84 10.03 -39.47 -0.40 -2.24 15 18 C 0.02 0.31 7.43 -38.65 -0.29 0.03 15 19 O -0.21 -4.37 10.77 3.55 0.04 -4.33 15 20 H 0.27 7.33 8.31 -40.82 -0.34 7.00 15 21 H 0.06 1.19 7.20 -51.93 -0.37 0.81 15 22 H 0.07 1.45 7.57 -51.93 -0.39 1.06 15 23 H 0.14 1.72 8.06 -52.49 -0.42 1.30 15 24 H 0.14 1.29 8.06 -52.49 -0.42 0.86 15 25 H 0.14 1.83 8.06 -52.49 -0.42 1.40 15 LS Contribution 236.07 15.07 3.56 3.56 Total: -1.00 -29.70 236.07 -5.02 -34.71 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -1.62 Total: -2.29 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -3.04 Total: -8.89 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.68 Total: -36.26 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: 0.04 Total: -4.33 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.70 -5.02 -34.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259808171.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.692 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds