Wall clock time and date at job start Mon Mar 30 2020 02:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00088 * 2 1 4 4 H 1.48494 * 109.47487 * 270.00224 * 3 2 1 5 5 H 1.48506 * 109.47265 * 30.00026 * 3 2 1 6 6 H 1.48505 * 109.47413 * 149.99823 * 3 2 1 7 7 C 1.37877 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00404 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99759 * 179.97438 * 7 2 1 10 10 C 1.50704 * 109.47077 * 180.02562 * 9 7 2 11 11 N 1.29885 * 124.85221 * 90.00182 * 10 9 7 12 12 C 1.36106 * 108.79537 * 179.97438 * 11 10 9 13 13 C 1.39590 * 133.76861 * 179.97438 * 12 11 10 14 14 C 1.37667 * 119.75866 * 180.02562 * 13 12 11 15 15 C 1.38921 * 120.39949 * 359.97438 * 14 13 12 16 16 F 1.35107 * 119.79070 * 180.02562 * 15 14 13 17 17 C 1.38105 * 120.42259 * 0.02562 * 15 14 13 18 18 C 1.38665 * 119.85383 * 0.02562 * 17 15 14 19 19 O 1.34255 * 124.85325 * 270.00215 * 10 9 7 20 20 H 0.97003 * 119.99939 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47132 * 59.99987 * 9 7 2 22 22 H 1.09005 * 109.47133 * 300.00125 * 9 7 2 23 23 H 1.07991 * 120.12156 * 359.97438 * 13 12 11 24 24 H 1.07994 * 119.79811 * 180.02562 * 14 13 12 25 25 H 1.08002 * 120.07543 * 180.27083 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0139 -2.6149 0.0001 11 7 4.2609 -3.3149 -1.0657 12 6 4.6976 -4.5478 -0.6892 13 6 5.0994 -5.6857 -1.3907 14 6 5.4970 -6.8088 -0.7009 15 6 5.5011 -6.8158 0.6883 16 9 5.8942 -7.9245 1.3528 17 6 5.1060 -5.6966 1.3944 18 6 4.7018 -4.5581 0.7138 19 8 4.2700 -3.3380 1.1019 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6796 0.8894 22 1 3.8745 -0.6808 -0.8905 23 1 5.0976 -5.6854 -2.4706 24 1 5.8084 -7.6894 -1.2430 25 1 5.1155 -5.7068 2.4744 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259808171.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:19 Heat of formation + Delta-G solvation = -34.105377 kcal Electronic energy + Delta-G solvation = -13878.827207 eV Core-core repulsion = 11158.420116 eV Total energy + Delta-G solvation = -2720.407091 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.04715 -44.30708 -38.85928 -36.08558 -35.17528 -32.67867 -31.88413 -29.52671 -25.81015 -24.37050 -23.33823 -22.39774 -19.58224 -19.24480 -18.51067 -17.81726 -17.70611 -16.61226 -16.46488 -16.00485 -15.46787 -15.19185 -14.48256 -14.30752 -14.11604 -13.74369 -13.35374 -13.08744 -12.58054 -12.53684 -12.26958 -11.80944 -11.71680 -11.56548 -10.85747 -10.03093 -9.36071 -8.37157 -6.49059 -0.50009 -0.00417 1.27629 1.37627 1.42154 1.46684 1.55566 2.32880 2.39997 2.85177 2.98549 3.11883 3.41334 3.81266 3.86320 4.06225 4.36396 4.65293 4.71878 4.78144 4.88195 4.92449 5.10529 5.15444 5.32728 5.57008 6.06590 6.53045 6.60543 7.13892 8.79195 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.064752 B = 0.006152 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.314612 B = 4550.161402 C = 4614.143647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.233 1.233 7 C -0.541 4.541 8 H 0.024 0.976 9 C 0.072 3.928 10 C 0.290 3.710 11 N -0.515 5.515 12 C -0.009 4.009 13 C -0.038 4.038 14 C -0.130 4.130 15 C 0.121 3.879 16 F -0.124 7.124 17 C -0.131 4.131 18 C -0.005 4.005 19 O -0.224 6.224 20 H 0.274 0.726 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.169 0.831 24 H 0.190 0.810 25 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.561 -10.198 0.233 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.181 4.181 3 Si 0.777 3.223 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.156 1.156 7 C -0.580 4.580 8 H 0.042 0.958 9 C 0.034 3.966 10 C 0.080 3.920 11 N -0.245 5.245 12 C -0.120 4.120 13 C -0.057 4.057 14 C -0.150 4.150 15 C 0.102 3.898 16 F -0.103 7.103 17 C -0.151 4.151 18 C -0.056 4.056 19 O -0.116 6.116 20 H 0.083 0.917 21 H 0.091 0.909 22 H 0.099 0.901 23 H 0.186 0.814 24 H 0.207 0.793 25 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 13.352 -9.946 -0.346 16.653 hybrid contribution -0.375 0.345 0.943 1.073 sum 12.977 -9.600 0.597 16.153 Atomic orbital electron populations 1.70027 1.08547 1.29015 1.50263 1.25944 0.95737 1.03563 0.92814 0.85586 0.79818 0.77012 0.79912 1.18429 1.20446 1.15599 1.20777 0.89339 0.93761 1.54086 0.95794 1.18486 0.95150 0.81424 1.01544 1.27143 0.90711 0.96800 0.77364 1.70691 1.20579 1.03863 1.29317 1.20620 1.04700 0.94759 0.91940 1.20475 0.95498 0.87973 1.01713 1.21336 1.01927 1.00280 0.91437 1.17082 0.99929 0.82426 0.90401 1.91544 1.88207 1.49541 1.80964 1.19739 1.04698 0.88684 1.01958 1.20282 1.03484 0.86894 0.94919 1.84529 1.67760 1.22082 1.37204 0.91696 0.90875 0.90138 0.81381 0.79271 0.82116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.35 13.96 21.45 0.30 -57.05 15 2 C 0.02 1.04 5.47 84.65 0.46 1.50 15 3 Si 0.96 40.69 27.47 68.60 1.88 42.57 15 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 15 6 H -0.23 -8.78 6.54 99.48 0.65 -8.13 15 7 C -0.54 -31.02 9.65 25.60 0.25 -30.77 15 8 H 0.02 1.57 7.98 -2.91 -0.02 1.54 15 9 C 0.07 3.34 4.67 29.10 0.14 3.48 15 10 C 0.29 13.25 7.43 88.40 0.66 13.90 15 11 N -0.51 -22.79 11.34 -296.23 -3.36 -26.15 15 12 C -0.01 -0.32 7.24 39.31 0.28 -0.03 15 13 C -0.04 -0.99 10.09 22.46 0.23 -0.76 15 14 C -0.13 -2.63 10.00 22.30 0.22 -2.40 15 15 C 0.12 2.83 7.29 22.40 0.16 2.99 15 16 F -0.12 -2.65 17.26 44.97 0.78 -1.88 15 17 C -0.13 -3.70 10.03 22.34 0.22 -3.47 15 18 C -0.01 -0.19 7.43 22.87 0.17 -0.02 15 19 O -0.22 -9.64 10.77 -10.21 -0.11 -9.75 15 20 H 0.27 15.36 8.31 -92.71 -0.77 14.59 15 21 H 0.07 3.09 7.20 -2.39 -0.02 3.07 15 22 H 0.08 3.47 7.57 -2.38 -0.02 3.46 15 23 H 0.17 3.49 8.06 -2.92 -0.02 3.47 15 24 H 0.19 2.18 8.06 -2.91 -0.02 2.15 15 25 H 0.16 3.83 8.06 -2.91 -0.02 3.81 15 Total: -1.00 -68.18 236.07 3.45 -64.73 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.17 Total: 3.11 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 2.79 Total: -15.59 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -3.06 Total: -83.19 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.11 Total: -9.75 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 1.88 Total: 42.57 kcal Total: -68.18 3.45 -64.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259808171.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.626 kcal (2) G-P(sol) polarization free energy of solvation -68.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds