Wall clock time and date at job start Mon Mar 30 2020 02:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00042 * 2 1 4 4 H 1.48503 * 109.47346 * 240.00237 * 3 2 1 5 5 H 1.48498 * 109.47180 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47276 * 119.99933 * 3 2 1 7 7 C 1.37879 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99500 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00338 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.47033 * 180.02562 * 9 7 2 11 11 C 1.35446 * 128.00505 * 264.97518 * 10 9 7 12 12 O 1.34044 * 106.44743 * 180.02562 * 11 10 9 13 13 N 1.20918 * 111.56370 * 359.97438 * 12 11 10 14 14 C 1.30174 * 111.60837 * 359.97438 * 13 12 11 15 15 C 1.50702 * 126.80448 * 179.73357 * 14 13 12 16 16 F 1.39896 * 109.47072 * 5.03216 * 15 14 13 17 17 F 1.39901 * 109.46632 * 125.02820 * 15 14 13 18 18 F 1.39899 * 109.47323 * 245.02566 * 15 14 13 19 19 H 0.96998 * 119.99956 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46536 * 60.00194 * 9 7 2 21 21 H 1.09002 * 109.47211 * 300.00194 * 9 7 2 22 22 H 1.08004 * 126.77907 * 0.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2304 -3.6447 -0.0005 11 6 2.7013 -4.3393 -1.0637 12 8 3.5437 -5.2592 -0.5730 13 7 3.6245 -5.1904 0.6315 14 6 2.8709 -4.2424 1.1091 15 6 2.7073 -3.8628 2.5583 16 9 3.5877 -4.6179 3.3404 17 9 2.9908 -2.5022 2.7187 18 9 1.3916 -4.1156 2.9610 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5566 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.4480 -4.1829 -2.1019 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259815238.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:02 Heat of formation + Delta-G solvation = -97.269635 kcal Electronic energy + Delta-G solvation = -15225.882764 eV Core-core repulsion = 11948.507136 eV Total energy + Delta-G solvation = -3277.375628 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.040 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.71735 -47.29985 -47.12715 -44.74258 -34.94962 -32.97838 -31.67924 -28.19191 -26.62237 -23.83765 -21.57682 -20.90448 -18.33460 -18.20450 -17.83903 -17.23197 -16.39077 -16.08976 -14.63598 -14.17240 -14.03833 -13.69435 -13.63263 -13.32739 -13.29075 -12.69888 -12.42106 -12.07227 -11.76618 -11.11278 -10.88528 -10.58373 -10.31459 -9.97245 -9.73345 -8.68467 -8.52625 -6.15775 -4.20522 1.64726 2.45022 2.80832 3.27747 3.32182 3.35980 3.55925 3.87024 4.28417 4.36726 4.78162 5.13976 5.22931 5.33490 5.68262 5.93098 6.51488 7.28216 7.35756 7.78408 8.10580 8.32830 8.81934 9.44560 10.94472 Molecular weight = 221.04amu Principal moments of inertia in cm(-1) A = 0.031056 B = 0.011136 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.377089 B = 2513.673810 C = 2903.965366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.076 3.924 10 C -0.101 4.101 11 C -0.087 4.087 12 O 0.122 5.878 13 N -0.331 5.331 14 C -0.087 4.087 15 C 0.558 3.442 16 F -0.178 7.178 17 F -0.149 7.149 18 F -0.168 7.168 19 H 0.265 0.735 20 H 0.042 0.958 21 H 0.039 0.961 22 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 -7.019 0.396 7.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.039 3.961 10 C -0.106 4.106 11 C -0.168 4.168 12 O 0.043 5.957 13 N -0.027 5.027 14 C -0.245 4.245 15 C 0.503 3.497 16 F -0.160 7.160 17 F -0.130 7.130 18 F -0.149 7.149 19 H 0.075 0.925 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.432 -7.767 1.071 9.007 hybrid contribution -0.127 1.631 0.012 1.636 sum 4.306 -6.136 1.083 7.574 Atomic orbital electron populations 1.69930 1.06032 1.27286 1.49653 1.24953 0.94882 0.99299 0.94722 0.86557 0.79569 0.82530 0.78877 1.20077 1.21111 1.19973 1.20879 0.92977 0.89398 1.52245 0.92416 1.17898 0.91266 0.87415 0.99502 1.22111 1.00571 0.99280 0.88606 1.25778 0.96455 0.92883 1.01642 1.84716 1.50057 1.46123 1.14824 1.73782 1.18332 1.18035 0.92531 1.23373 1.04190 1.00665 0.96258 1.16681 0.74076 0.75520 0.83447 1.93181 1.69349 1.76477 1.76947 1.93329 1.93081 1.30805 1.95774 1.93218 1.36250 1.93981 1.91452 0.92532 0.93943 0.94317 0.75983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 13.29 55.43 0.74 -24.50 14 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 14 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 14 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 14 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 14 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 14 7 C -0.52 -13.75 9.09 -34.44 -0.31 -14.06 14 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 14 9 C 0.08 1.84 5.47 -29.03 -0.16 1.68 14 10 C -0.10 -2.07 5.51 -104.42 -0.58 -2.65 14 11 C -0.09 -1.43 12.26 29.74 0.36 -1.06 14 12 O 0.12 2.02 11.20 17.17 0.19 2.21 14 13 N -0.33 -6.25 11.89 33.42 0.40 -5.85 14 14 C -0.09 -1.77 6.59 -82.10 -0.54 -2.31 14 15 C 0.56 11.09 3.45 36.01 0.12 11.22 14 16 F -0.18 -3.29 17.17 2.25 0.04 -3.25 14 17 F -0.15 -3.21 17.30 2.25 0.04 -3.17 14 18 F -0.17 -3.29 17.30 2.25 0.04 -3.25 14 19 H 0.27 7.13 8.31 -40.82 -0.34 6.79 14 20 H 0.04 1.03 8.14 -51.93 -0.42 0.61 14 21 H 0.04 1.01 8.14 -51.93 -0.42 0.58 14 22 H 0.22 2.68 8.06 -52.48 -0.42 2.26 14 LS Contribution 227.23 15.07 3.42 3.42 Total: -1.00 -28.53 227.23 -2.16 -30.69 By element: Atomic # 1 Polarization: -5.93 SS G_CDS: -0.81 Total: -6.74 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -1.20 Total: -5.54 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 1.13 Total: -30.35 kcal Atomic # 8 Polarization: 2.02 SS G_CDS: 0.19 Total: 2.21 kcal Atomic # 9 Polarization: -9.78 SS G_CDS: 0.12 Total: -9.66 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -28.53 -2.16 -30.69 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259815238.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.577 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds