Wall clock time and date at job start Mon Mar 30 2020 02:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00042 * 2 1 4 4 H 1.48503 * 109.47346 * 240.00237 * 3 2 1 5 5 H 1.48498 * 109.47180 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47276 * 119.99933 * 3 2 1 7 7 C 1.37879 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99500 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00338 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.47033 * 180.02562 * 9 7 2 11 11 C 1.35446 * 128.00505 * 264.97518 * 10 9 7 12 12 O 1.34044 * 106.44743 * 180.02562 * 11 10 9 13 13 N 1.20918 * 111.56370 * 359.97438 * 12 11 10 14 14 C 1.30174 * 111.60837 * 359.97438 * 13 12 11 15 15 C 1.50702 * 126.80448 * 179.73357 * 14 13 12 16 16 F 1.39896 * 109.47072 * 5.03216 * 15 14 13 17 17 F 1.39901 * 109.46632 * 125.02820 * 15 14 13 18 18 F 1.39899 * 109.47323 * 245.02566 * 15 14 13 19 19 H 0.96998 * 119.99956 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46536 * 60.00194 * 9 7 2 21 21 H 1.09002 * 109.47211 * 300.00194 * 9 7 2 22 22 H 1.08004 * 126.77907 * 0.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2304 -3.6447 -0.0005 11 6 2.7013 -4.3393 -1.0637 12 8 3.5437 -5.2592 -0.5730 13 7 3.6245 -5.1904 0.6315 14 6 2.8709 -4.2424 1.1091 15 6 2.7073 -3.8628 2.5583 16 9 3.5877 -4.6179 3.3404 17 9 2.9908 -2.5022 2.7187 18 9 1.3916 -4.1156 2.9610 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5566 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.4480 -4.1829 -2.1019 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259815238.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:02 Heat of formation + Delta-G solvation = -114.304866 kcal Electronic energy + Delta-G solvation = -15226.621467 eV Core-core repulsion = 11948.507136 eV Total energy + Delta-G solvation = -3278.114331 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.040 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -51.29964 -48.84839 -48.76110 -46.23020 -36.60289 -34.81023 -33.31479 -30.02192 -28.18854 -25.72930 -23.11428 -22.51559 -19.83372 -19.78550 -19.39541 -18.81252 -18.32798 -17.66219 -16.52915 -15.71811 -15.63748 -15.23361 -15.19067 -14.94398 -14.90147 -14.47728 -14.32744 -13.81787 -13.34726 -12.89290 -12.70693 -12.35502 -11.98290 -11.84685 -11.48364 -10.58836 -10.29641 -8.21200 -6.31877 0.22083 0.92441 1.27133 1.42962 1.45111 1.52441 2.15831 2.34203 2.42989 2.75121 3.12679 3.19235 3.67871 3.77462 4.20923 4.57072 4.93496 5.30435 5.43402 5.72016 6.10415 6.77039 6.91096 7.36729 8.88962 Molecular weight = 221.04amu Principal moments of inertia in cm(-1) A = 0.031056 B = 0.011136 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.377089 B = 2513.673810 C = 2903.965366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.088 3.912 10 C -0.144 4.144 11 C -0.041 4.041 12 O 0.146 5.854 13 N -0.337 5.337 14 C -0.104 4.104 15 C 0.558 3.442 16 F -0.170 7.170 17 F -0.163 7.163 18 F -0.169 7.169 19 H 0.266 0.734 20 H 0.037 0.963 21 H 0.008 0.992 22 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.811 -7.338 -0.751 8.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.072 0.928 9 C 0.051 3.949 10 C -0.148 4.148 11 C -0.121 4.121 12 O 0.065 5.935 13 N -0.030 5.030 14 C -0.260 4.260 15 C 0.502 3.498 16 F -0.151 7.151 17 F -0.144 7.144 18 F -0.151 7.151 19 H 0.075 0.925 20 H 0.055 0.945 21 H 0.026 0.974 22 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 5.485 -8.102 -0.055 9.784 hybrid contribution -0.436 1.642 0.333 1.732 sum 5.049 -6.459 0.278 8.203 Atomic orbital electron populations 1.70033 1.07386 1.28078 1.50868 1.25734 0.95619 1.02584 0.94532 0.85635 0.78456 0.78782 0.79062 1.18786 1.20709 1.20133 1.21181 0.92936 0.90769 1.51437 0.92818 1.17523 0.91488 0.88228 0.97710 1.21803 1.02246 1.00318 0.90483 1.26471 0.93233 0.89976 1.02416 1.84729 1.49267 1.45501 1.13997 1.73788 1.18206 1.17695 0.93347 1.23364 1.05016 1.01433 0.96166 1.16709 0.74114 0.75006 0.83931 1.93191 1.69019 1.76105 1.76787 1.93292 1.93192 1.32024 1.95898 1.93209 1.36444 1.93919 1.91517 0.92476 0.94504 0.97359 0.71364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.70 13.29 21.45 0.28 -52.42 14 2 C 0.01 0.79 5.46 84.65 0.46 1.25 14 3 Si 0.96 42.61 29.54 68.60 2.03 44.64 14 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 14 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 14 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 14 7 C -0.53 -27.82 9.09 25.60 0.23 -27.59 14 8 H 0.05 2.83 7.74 -2.91 -0.02 2.80 14 9 C 0.09 4.25 5.47 29.10 0.16 4.41 14 10 C -0.14 -5.67 5.51 -19.74 -0.11 -5.78 14 11 C -0.04 -1.18 12.26 67.17 0.82 -0.36 14 12 O 0.15 4.33 11.20 71.60 0.80 5.13 14 13 N -0.34 -11.96 11.89 -49.55 -0.59 -12.55 14 14 C -0.10 -4.07 6.59 43.58 0.29 -3.78 14 15 C 0.56 22.11 3.45 71.24 0.25 22.35 14 16 F -0.17 -6.15 17.17 44.97 0.77 -5.38 14 17 F -0.16 -7.08 17.30 44.97 0.78 -6.31 14 18 F -0.17 -6.72 17.30 44.97 0.78 -5.94 14 19 H 0.27 14.40 8.31 -92.71 -0.77 13.63 14 20 H 0.04 1.78 8.14 -2.39 -0.02 1.76 14 21 H 0.01 0.44 8.14 -2.39 -0.02 0.42 14 22 H 0.27 5.04 8.06 -2.91 -0.02 5.02 14 Total: -1.00 -60.51 227.23 8.22 -52.29 By element: Atomic # 1 Polarization: -11.22 SS G_CDS: 1.27 Total: -9.96 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 2.10 Total: -9.50 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -0.30 Total: -64.97 kcal Atomic # 8 Polarization: 4.33 SS G_CDS: 0.80 Total: 5.13 kcal Atomic # 9 Polarization: -19.96 SS G_CDS: 2.33 Total: -17.63 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -60.51 8.22 -52.29 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259815238.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.019 kcal (2) G-P(sol) polarization free energy of solvation -60.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds