Wall clock time and date at job start Mon Mar 30 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.31033 * 125.07160 * 2 1 4 4 N 1.37535 * 116.42111 * 179.78653 * 3 2 1 5 5 C 1.40105 * 138.49431 * 180.12377 * 4 3 2 6 6 C 1.39799 * 126.04118 * 0.34483 * 5 4 3 7 7 H 1.07999 * 119.99909 * 209.40476 * 6 5 4 8 8 C 1.39699 * 120.00003 * 29.39912 * 6 5 4 9 9 N 1.31178 * 120.00309 * 19.31400 * 8 6 5 10 10 Si 1.86810 * 119.99878 * 199.31360 * 8 6 5 11 11 H 1.48499 * 109.46811 * 90.00005 * 10 8 6 12 12 H 1.48500 * 109.46746 * 209.99975 * 10 8 6 13 13 H 1.48499 * 109.46701 * 330.00037 * 10 8 6 14 14 C 1.39543 * 107.91876 * 180.35734 * 5 4 3 15 15 C 1.50703 * 126.29546 * 179.97438 * 14 5 4 16 16 C 1.38346 * 107.41000 * 0.02562 * 14 5 4 17 17 C 1.35540 * 113.71555 * 0.50141 * 4 3 2 18 18 S 1.75753 * 125.06571 * 180.30509 * 2 1 3 19 19 H 1.08998 * 109.47262 * 179.72286 * 1 2 3 20 20 H 1.08996 * 109.46924 * 59.71791 * 1 2 3 21 21 H 1.08999 * 109.46584 * 299.71722 * 1 2 3 22 22 H 1.07995 * 121.78267 * 0.02562 * 3 2 1 23 23 H 0.96994 * 119.99989 * 174.86385 * 9 8 6 24 24 H 1.08997 * 109.47087 * 274.47147 * 15 14 5 25 25 H 1.08990 * 109.47349 * 34.47514 * 15 14 5 26 26 H 1.09004 * 109.46973 * 154.47898 * 15 14 5 27 27 H 1.08003 * 126.10728 * 180.02562 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2600 1.0724 0.0000 4 7 3.6197 0.8656 0.0046 5 6 4.7966 1.6257 0.0086 6 6 4.8743 3.0215 0.0156 7 1 5.7179 3.5177 -0.4410 8 6 3.8606 3.7744 0.6132 9 7 3.0509 3.2137 1.4796 10 14 3.6583 5.5799 0.1785 11 1 2.7335 5.7104 -0.9761 12 1 3.1002 6.3103 1.3448 13 1 4.9803 6.1541 -0.1789 14 6 5.8776 0.7432 0.0039 15 6 7.3368 1.1200 0.0053 16 6 5.3635 -0.5411 -0.0034 17 6 3.9720 -0.4432 -0.0024 18 16 2.5168 -1.4385 -0.0077 19 1 -0.3634 -1.0276 -0.0050 20 1 -0.3633 0.5182 -0.8874 21 1 -0.3632 0.5094 0.8925 22 1 1.8355 2.0654 0.0004 23 1 2.3955 3.7523 1.9500 24 1 7.6682 1.2935 -1.0184 25 1 7.4769 2.0282 0.5914 26 1 7.9206 0.3108 0.4440 27 1 5.9370 -1.4562 -0.0079 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259816788.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:26 Heat of formation + Delta-G solvation = 41.421138 kcal Electronic energy + Delta-G solvation = -12805.202942 eV Core-core repulsion = 10654.284102 eV Total energy + Delta-G solvation = -2150.918839 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.91736 -36.76711 -35.42532 -32.87719 -30.62843 -29.38278 -26.87545 -25.36187 -23.21386 -20.86766 -19.69264 -19.23120 -17.89549 -16.74791 -15.86105 -15.66672 -15.01424 -14.48758 -14.26603 -14.21403 -13.56833 -13.48477 -13.43636 -13.19217 -12.98328 -12.53903 -12.49196 -12.18446 -11.81967 -11.72865 -11.24131 -10.79709 -10.31338 -8.86444 -8.71756 -8.01688 -6.15933 0.51809 0.86105 1.24215 1.33300 1.37235 1.49781 1.96144 2.14222 2.20507 2.54920 3.15304 4.16010 4.40364 4.49895 4.70888 4.76223 4.85754 4.94797 5.02026 5.13605 5.19644 5.22296 5.29034 5.47021 5.72513 5.97897 6.13475 6.58208 6.65684 6.91355 7.21857 8.28620 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.024810 B = 0.013843 C = 0.009213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.312618 B = 2022.161234 C = 3038.312506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.240 4.240 3 C 0.096 3.904 4 N -0.401 5.401 5 C 0.215 3.785 6 C -0.487 4.487 7 H 0.097 0.903 8 C 0.032 3.968 9 N -0.842 5.842 10 Si 0.986 3.014 11 H -0.265 1.265 12 H -0.270 1.270 13 H -0.256 1.256 14 C -0.290 4.290 15 C -0.037 4.037 16 C -0.131 4.131 17 C -0.174 4.174 18 S 0.041 5.959 19 H 0.082 0.918 20 H 0.083 0.917 21 H 0.077 0.923 22 H 0.155 0.845 23 H 0.289 0.711 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -1.120 -2.125 4.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.358 4.358 3 C -0.032 4.032 4 N -0.076 5.076 5 C 0.105 3.895 6 C -0.521 4.521 7 H 0.115 0.885 8 C -0.181 4.181 9 N -0.471 5.471 10 Si 0.807 3.193 11 H -0.190 1.190 12 H -0.194 1.194 13 H -0.179 1.179 14 C -0.295 4.295 15 C -0.095 4.095 16 C -0.164 4.164 17 C -0.389 4.389 18 S 0.294 5.706 19 H 0.101 0.899 20 H 0.102 0.898 21 H 0.096 0.904 22 H 0.172 0.828 23 H 0.099 0.901 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.528 -2.388 -2.021 5.504 hybrid contribution 0.235 2.116 0.201 2.139 sum -4.293 -0.271 -1.820 4.671 Atomic orbital electron populations 1.20163 0.84117 1.03707 1.03327 1.23794 1.01701 0.93544 1.16794 1.20503 0.81742 1.00440 1.00493 1.42641 1.04126 1.06066 1.54742 1.18481 0.80653 0.91934 0.98388 1.18826 1.08018 0.89230 1.36010 0.88529 1.26738 0.93268 1.05704 0.92405 1.70014 1.17951 1.40193 1.18946 0.85131 0.79821 0.75711 0.78683 1.18957 1.19437 1.17922 1.19728 0.95259 0.91704 1.22794 1.19692 0.89529 1.00088 1.00163 1.20288 0.88843 0.97292 1.09969 1.23786 0.98570 0.87437 1.29058 1.83142 0.92540 1.07051 1.87873 0.89866 0.89796 0.90442 0.82789 0.90088 0.93168 0.93648 0.91959 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.56 10.36 71.24 0.74 -0.82 15 2 C -0.24 -9.81 6.42 25.61 0.16 -9.64 15 3 C 0.10 4.64 9.34 83.73 0.78 5.42 15 4 N -0.40 -21.60 3.01 -341.50 -1.03 -22.62 15 5 C 0.21 11.94 6.35 38.51 0.24 12.19 15 6 C -0.49 -26.02 8.90 23.00 0.20 -25.82 15 7 H 0.10 4.94 7.91 -2.91 -0.02 4.92 15 8 C 0.03 1.61 5.01 85.14 0.43 2.03 15 9 N -0.84 -43.32 10.28 21.80 0.22 -43.09 15 10 Si 0.99 37.56 29.61 68.60 2.03 39.59 15 11 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 12 H -0.27 -9.82 7.11 99.48 0.71 -9.12 15 13 H -0.26 -9.46 7.11 99.48 0.71 -8.75 15 14 C -0.29 -14.78 6.20 -19.52 -0.12 -14.90 15 15 C -0.04 -1.54 10.13 71.24 0.72 -0.82 15 16 C -0.13 -6.45 10.85 22.60 0.25 -6.20 15 17 C -0.17 -8.85 7.86 84.42 0.66 -8.19 15 18 S 0.04 1.73 23.35 -56.49 -1.32 0.41 15 19 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 20 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 21 H 0.08 2.09 8.14 -2.39 -0.02 2.07 15 22 H 0.15 7.44 6.52 -2.91 -0.02 7.42 15 23 H 0.29 13.49 8.31 -92.71 -0.77 12.71 15 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 15 25 H 0.04 1.88 8.04 -2.39 -0.02 1.86 15 26 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 27 H 0.14 5.82 8.06 -2.91 -0.02 5.80 15 Total: -1.00 -61.59 248.54 5.15 -56.44 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.17 Total: 16.04 kcal Atomic # 6 Polarization: -50.83 SS G_CDS: 4.07 Total: -46.76 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.80 Total: -65.72 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.32 Total: 0.41 kcal Total: -61.59 5.15 -56.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816788.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.861 kcal (2) G-P(sol) polarization free energy of solvation -61.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds