Wall clock time and date at job start Mon Mar 30 2020 02:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86802 * 119.99981 * 2 1 4 4 H 1.48498 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46690 * 299.99501 * 3 2 1 6 6 H 1.48500 * 109.47148 * 59.99357 * 3 2 1 7 7 C 1.38632 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99827 * 180.02562 * 7 2 1 9 9 O 1.34815 * 120.00014 * 0.02562 * 7 2 1 10 10 C 1.35788 * 116.99880 * 185.05791 * 9 7 2 11 11 C 1.39027 * 119.91704 * 174.44996 * 10 9 7 12 12 C 1.38014 * 120.11939 * 179.97438 * 11 10 9 13 13 C 1.38674 * 119.90649 * 0.02562 * 12 11 10 14 14 N 1.39565 * 133.27633 * 180.02562 * 13 12 11 15 15 H 0.96993 * 126.25247 * 359.92575 * 14 13 12 16 16 C 1.34772 * 107.48453 * 179.97438 * 14 13 12 17 17 O 1.21597 * 125.25997 * 179.97438 * 16 14 13 18 18 O 1.34223 * 109.47337 * 359.97438 * 16 14 13 19 19 C 1.35574 * 109.19611 * 0.02562 * 18 16 14 20 20 C 1.38510 * 132.93589 * 180.02562 * 19 18 16 21 21 H 0.96992 * 120.00244 * 0.02562 * 1 2 3 22 22 H 1.08009 * 119.94233 * 359.97438 * 11 10 9 23 23 H 1.07992 * 120.04760 * 179.72472 * 12 11 10 24 24 H 1.08004 * 120.07003 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7097 1.3465 0.0006 5 1 1.8910 2.3963 -1.2126 6 1 1.8909 2.3965 1.2124 7 6 2.0089 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0703 -3.5045 0.1077 11 6 1.4329 -4.7340 0.2303 12 6 2.1763 -5.8917 0.3390 13 6 3.5615 -5.8277 0.3264 14 7 4.5648 -6.7938 0.4149 15 1 4.4334 -7.7502 0.5088 16 6 5.7495 -6.1547 0.3472 17 8 6.8399 -6.6907 0.3941 18 8 5.5394 -4.8351 0.2200 19 6 4.2051 -4.5957 0.2037 20 6 3.4559 -3.4358 0.0944 21 1 -0.4850 0.8400 -0.0004 22 1 0.3540 -4.7833 0.2405 23 1 1.6800 -6.8457 0.4387 24 1 3.9493 -2.4799 -0.0012 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259984555.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:14 Heat of formation + Delta-G solvation = -45.987798 kcal Electronic energy + Delta-G solvation = -14163.224897 eV Core-core repulsion = 11429.929756 eV Total energy + Delta-G solvation = -2733.295141 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.74639 -38.96873 -37.47951 -36.21410 -34.40047 -32.39011 -30.08304 -28.02892 -25.49223 -23.19586 -22.78157 -21.85103 -18.58775 -18.47750 -17.37979 -16.92926 -16.34541 -15.64021 -14.97340 -14.50524 -13.95012 -13.90120 -13.50902 -13.02653 -12.73255 -12.25170 -12.12044 -11.84614 -11.20568 -11.06272 -10.72324 -10.53290 -10.10135 -9.70928 -8.91908 -8.34019 -7.25163 -6.65049 -4.23598 1.61046 1.83109 2.67002 2.79266 3.03933 3.06622 3.12252 3.35734 3.82658 4.12504 4.81523 4.89558 5.02952 5.35741 5.55065 5.79640 5.87724 6.25162 6.36609 6.66994 6.77185 6.85755 7.06390 7.17850 7.59215 7.78046 8.04103 8.79699 9.40955 10.51388 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.045931 B = 0.007324 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.463923 B = 3822.167187 C = 4419.318641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.396 4.396 8 H 0.098 0.902 9 O -0.159 6.159 10 C 0.166 3.834 11 C -0.165 4.165 12 C -0.053 4.053 13 C -0.041 4.041 14 N -0.642 5.642 15 H 0.434 0.566 16 C 0.633 3.367 17 O -0.516 6.516 18 O -0.243 6.243 19 C 0.089 3.911 20 C -0.209 4.209 21 H 0.273 0.727 22 H 0.136 0.864 23 H 0.128 0.872 24 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.344 -7.216 0.570 7.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.472 4.472 8 H 0.115 0.885 9 O -0.061 6.061 10 C 0.110 3.890 11 C -0.185 4.185 12 C -0.073 4.073 13 C -0.137 4.137 14 N -0.300 5.300 15 H 0.276 0.724 16 C 0.387 3.613 17 O -0.402 6.402 18 O -0.148 6.148 19 C 0.043 3.957 20 C -0.229 4.229 21 H 0.083 0.917 22 H 0.154 0.846 23 H 0.146 0.854 24 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.722 -6.947 0.539 7.481 hybrid contribution 0.464 0.231 0.053 0.520 sum 3.186 -6.716 0.591 7.457 Atomic orbital electron populations 1.70039 1.06052 1.28140 1.44427 1.25350 0.95908 0.99070 0.95947 0.85597 0.79317 0.79860 0.78454 1.18818 1.19925 1.19922 1.21468 0.92108 0.80478 1.53141 0.88497 1.84030 1.33741 1.11393 1.76939 1.18851 0.88496 0.88568 0.93088 1.20106 1.00144 0.89142 1.09065 1.19572 0.88480 0.98415 1.00867 1.18068 0.91250 0.87182 1.17234 1.43277 1.05268 1.10188 1.71217 0.72410 1.18493 0.84773 0.79442 0.78632 1.91116 1.24363 1.66747 1.57991 1.84913 1.24832 1.25412 1.79664 1.18686 0.78850 0.94690 1.03511 1.19889 0.92551 0.96154 1.14353 0.91669 0.84608 0.85424 0.83725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.29 13.67 55.48 0.76 -22.53 14 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 14 3 Si 0.94 19.29 29.55 -169.99 -5.02 14.27 14 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 14 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 14 6 H -0.27 -5.51 7.11 56.52 0.40 -5.10 14 7 C -0.40 -10.20 9.48 30.88 0.29 -9.90 14 8 H 0.10 2.31 5.19 -52.48 -0.27 2.04 14 9 O -0.16 -4.08 9.75 -0.03 0.00 -4.08 14 10 C 0.17 3.54 6.65 -39.11 -0.26 3.28 14 11 C -0.16 -2.90 9.98 -39.37 -0.39 -3.30 14 12 C -0.05 -0.78 10.06 -39.50 -0.40 -1.18 14 13 C -0.04 -0.67 7.26 -83.70 -0.61 -1.27 14 14 N -0.64 -9.30 6.23 -14.33 -0.09 -9.39 14 15 H 0.43 4.61 8.96 -40.82 -0.37 4.25 14 16 C 0.63 11.29 9.44 54.05 0.51 11.80 14 17 O -0.52 -10.21 18.05 -19.00 -0.34 -10.55 14 18 O -0.24 -4.67 10.72 -22.02 -0.24 -4.90 14 19 C 0.09 1.68 7.35 -39.00 -0.29 1.40 14 20 C -0.21 -4.27 9.18 -39.30 -0.36 -4.63 14 21 H 0.27 6.82 8.31 -40.82 -0.34 6.48 14 22 H 0.14 2.19 8.06 -52.48 -0.42 1.76 14 23 H 0.13 1.41 8.06 -52.49 -0.42 0.99 14 24 H 0.15 2.98 5.62 -52.48 -0.30 2.69 14 LS Contribution 228.38 15.07 3.44 3.44 Total: -1.00 -29.34 228.38 -4.00 -33.34 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -0.91 Total: 3.18 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.60 Total: -2.79 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.67 Total: -31.92 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.58 Total: -19.54 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.34 -4.00 -33.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259984555.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.646 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds