Wall clock time and date at job start Mon Mar 30 2020 03:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47256 * 269.99905 * 3 2 1 5 5 H 1.48506 * 109.46930 * 29.99746 * 3 2 1 6 6 H 1.48499 * 109.47104 * 149.99608 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.37655 * 120.11887 * 264.72990 * 12 9 7 14 14 C 1.39084 * 119.98532 * 179.74772 * 13 12 9 15 15 O 1.35662 * 119.88439 * 180.22970 * 14 13 12 16 16 C 1.39078 * 120.22681 * 0.52105 * 14 13 12 17 17 C 1.36583 * 120.24928 * 359.73309 * 16 14 13 18 18 C 1.40037 * 120.12248 * 84.99724 * 12 9 7 19 19 C 1.46855 * 120.11265 * 0.02666 * 18 12 9 20 20 O 1.21293 * 120.00440 * 179.97438 * 19 18 12 21 21 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 22 22 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 23 23 H 1.00904 * 111.00313 * 183.95658 * 11 9 7 24 24 H 1.07999 * 120.00790 * 359.96399 * 13 12 9 25 25 H 0.96702 * 113.99495 * 270.29306 * 15 14 13 26 26 H 1.07999 * 119.87743 * 179.70456 * 16 14 13 27 27 H 1.07996 * 119.99985 * 179.97438 * 17 16 14 28 28 H 1.08004 * 120.00230 * 359.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.5961 -4.2407 -1.1851 14 6 3.5041 -5.2942 -1.1824 15 8 3.8667 -5.8772 -2.3525 16 6 4.0370 -5.7561 0.0163 17 6 3.6768 -5.1750 1.1987 18 6 2.7673 -4.1101 1.2072 19 6 2.3776 -3.4841 2.4772 20 8 2.8436 -3.8892 3.5212 21 1 -0.4850 0.8400 -0.0004 22 1 0.9652 -2.5259 -2.0381 23 1 -0.1571 -3.4138 -1.1907 24 1 2.1807 -3.8881 -2.1176 25 1 3.3025 -6.6176 -2.6144 26 1 4.7380 -6.5777 0.0123 27 1 4.0928 -5.5372 2.1272 28 1 1.6761 -2.6630 2.4816 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260102208.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:45 Heat of formation + Delta-G solvation = -71.341486 kcal Electronic energy + Delta-G solvation = -14637.493962 eV Core-core repulsion = 12038.932497 eV Total energy + Delta-G solvation = -2598.561465 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.18420 -39.60698 -37.99719 -36.07495 -33.72787 -31.37177 -30.98434 -28.05239 -25.41634 -24.89621 -22.11009 -21.65370 -19.06262 -18.56080 -18.00936 -17.28248 -16.65313 -16.14486 -15.96887 -15.56471 -15.23189 -14.95965 -14.69742 -14.35949 -13.74996 -13.48390 -12.96377 -12.90092 -12.67594 -12.57624 -12.05346 -11.39698 -11.31651 -10.69128 -10.54540 -9.86796 -9.55245 -8.95241 -8.00301 -6.21773 -0.39471 0.43988 1.42381 1.43917 1.47295 1.54708 2.45698 2.78563 3.18515 3.25520 3.48047 3.90023 3.96037 4.27099 4.36838 4.45696 4.64898 4.79107 5.02194 5.12245 5.33561 5.37098 5.58215 5.74931 5.80710 6.10778 6.44081 6.63028 6.82005 7.07347 7.25170 7.51377 9.02462 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.009978 C = 0.008434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.367007 B = 2805.526885 C = 3319.219923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.939 3.061 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.044 0.956 9 C 0.251 3.749 10 H 0.035 0.965 11 N -0.820 5.820 12 C -0.016 4.016 13 C -0.180 4.180 14 C 0.152 3.848 15 O -0.503 6.503 16 C -0.176 4.176 17 C -0.045 4.045 18 C -0.224 4.224 19 C 0.397 3.603 20 O -0.505 6.505 21 H 0.258 0.742 22 H 0.325 0.675 23 H 0.316 0.684 24 H 0.133 0.867 25 H 0.416 0.584 26 H 0.157 0.843 27 H 0.140 0.860 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 -10.836 -2.831 11.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.159 4.159 3 Si 0.766 3.234 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.062 0.938 9 C 0.141 3.859 10 H 0.053 0.947 11 N -0.348 5.348 12 C -0.019 4.019 13 C -0.199 4.199 14 C 0.107 3.893 15 O -0.317 6.317 16 C -0.195 4.195 17 C -0.063 4.063 18 C -0.225 4.225 19 C 0.260 3.740 20 O -0.382 6.382 21 H 0.067 0.933 22 H 0.139 0.861 23 H 0.128 0.872 24 H 0.151 0.849 25 H 0.276 0.724 26 H 0.175 0.825 27 H 0.158 0.842 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.289 -9.838 -2.033 10.924 hybrid contribution 0.447 -0.044 -0.399 0.601 sum 4.736 -9.883 -2.433 11.226 Atomic orbital electron populations 1.70179 1.06716 1.26565 1.47214 1.25519 0.95311 1.01253 0.93856 0.85878 0.78862 0.80644 0.78052 1.20435 1.20859 1.19962 1.20984 0.91927 0.90597 1.54699 0.93802 1.18066 0.87851 0.88864 0.91121 0.94719 1.58943 1.28272 1.43435 1.04106 1.21730 0.94644 0.93686 0.91879 1.21336 1.00736 0.99306 0.98545 1.18783 0.92203 0.92623 0.85704 1.84671 1.58107 1.52388 1.36544 1.21232 1.03914 1.03444 0.90871 1.21145 0.93340 0.92708 0.99113 1.20779 1.04418 1.01749 0.95578 1.24208 0.79924 0.83656 0.86195 1.90404 1.50735 1.61367 1.35718 0.93325 0.86079 0.87202 0.84882 0.72369 0.82538 0.84221 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.09 12.77 21.45 0.27 -47.81 15 2 C 0.05 2.40 5.39 84.65 0.46 2.86 15 3 Si 0.94 42.34 29.54 68.60 2.03 44.37 15 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 7 C -0.54 -27.95 8.71 25.60 0.22 -27.73 15 8 H 0.04 2.31 7.74 -2.91 -0.02 2.29 15 9 C 0.25 11.34 2.23 43.42 0.10 11.44 15 10 H 0.04 1.71 6.61 -2.39 -0.02 1.70 15 11 N -0.82 -34.85 8.13 -174.95 -1.42 -36.27 15 12 C -0.02 -0.63 5.02 -19.57 -0.10 -0.72 15 13 C -0.18 -6.01 9.20 22.33 0.21 -5.81 15 14 C 0.15 4.29 6.71 22.67 0.15 4.44 15 15 O -0.50 -11.40 13.48 -89.79 -1.21 -12.61 15 16 C -0.18 -4.72 9.92 22.08 0.22 -4.50 15 17 C -0.04 -1.39 9.54 22.32 0.21 -1.18 15 18 C -0.22 -8.26 5.87 -20.15 -0.12 -8.38 15 19 C 0.40 15.48 10.87 70.08 0.76 16.24 15 20 O -0.50 -20.78 17.15 -3.07 -0.05 -20.83 15 21 H 0.26 13.68 8.31 -92.71 -0.77 12.91 15 22 H 0.33 13.17 7.21 -89.70 -0.65 12.52 15 23 H 0.32 11.68 9.06 -89.69 -0.81 10.87 15 24 H 0.13 4.27 6.29 -2.91 -0.02 4.25 15 25 H 0.42 4.75 9.06 -74.06 -0.67 4.08 15 26 H 0.16 3.17 8.06 -2.91 -0.02 3.15 15 27 H 0.14 4.00 7.64 -2.91 -0.02 3.98 15 28 H 0.11 4.39 6.47 -2.91 -0.02 4.37 15 Total: -1.00 -62.34 252.31 0.82 -61.52 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.90 Total: 24.99 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 2.11 Total: -13.34 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -1.15 Total: -84.09 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.26 Total: -33.44 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -62.34 0.82 -61.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102208.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.824 kcal (2) G-P(sol) polarization free energy of solvation -62.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds