Wall clock time and date at job start Mon Mar 30 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48505 * 109.47111 * 89.99875 * 3 2 1 5 5 H 1.48503 * 109.46598 * 209.99385 * 3 2 1 6 6 H 1.48495 * 109.47374 * 329.99328 * 3 2 1 7 7 C 1.37870 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00465 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99863 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.47255 * 300.00320 * 9 7 2 11 11 N 1.46898 * 109.46702 * 60.00377 * 9 7 2 12 12 C 1.50700 * 109.47145 * 180.02562 * 9 7 2 13 13 C 1.37939 * 120.02986 * 265.70849 * 12 9 7 14 14 C 1.38293 * 120.23130 * 180.02562 * 13 12 9 15 15 C 1.38896 * 120.29761 * 359.97438 * 14 13 12 16 16 O 1.35911 * 119.96810 * 179.97438 * 15 14 13 17 17 C 1.38388 * 120.05699 * 0.02562 * 15 14 13 18 18 C 1.39803 * 119.76505 * 359.68406 * 17 15 14 19 19 C 1.47182 * 120.14776 * 180.31477 * 18 17 15 20 20 O 1.21252 * 119.99412 * 5.08314 * 19 18 17 21 21 H 0.96996 * 119.99879 * 0.02562 * 1 2 3 22 22 H 1.00893 * 111.00352 * 296.04138 * 11 9 7 23 23 H 1.00895 * 111.00464 * 60.00337 * 11 9 7 24 24 H 1.07995 * 119.88410 * 359.97438 * 13 12 9 25 25 H 1.08000 * 119.84800 * 180.02562 * 14 13 12 26 26 H 0.96703 * 114.00008 * 90.00612 * 16 15 14 27 27 H 1.07998 * 120.11441 * 179.97438 * 17 15 14 28 28 H 1.08000 * 120.00111 * 185.08878 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4401 -0.6999 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8753 -0.6803 -0.8888 11 7 4.0007 -0.5013 1.2006 12 6 4.0139 -2.6148 0.0010 13 6 4.3278 -3.2361 1.1919 14 6 4.7897 -4.5396 1.1966 15 6 4.9407 -5.2338 0.0030 16 8 5.3956 -6.5145 0.0154 17 6 4.6294 -4.6222 -1.1987 18 6 4.1565 -3.3066 -1.2059 19 6 3.8163 -2.6504 -2.4786 20 8 3.8576 -3.2789 -3.5147 21 1 -0.4850 0.8400 -0.0004 22 1 3.7313 0.4710 1.1919 23 1 3.6769 -0.9587 2.0397 24 1 4.2133 -2.7024 2.1237 25 1 5.0332 -5.0202 2.1326 26 1 4.6969 -7.1794 0.0850 27 1 4.7468 -5.1610 -2.1273 28 1 3.5300 -1.6091 -2.4897 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260128435.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:23 Heat of formation + Delta-G solvation = -45.884820 kcal Electronic energy + Delta-G solvation = -14649.747459 eV Core-core repulsion = 12052.289878 eV Total energy + Delta-G solvation = -2597.457581 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.79026 -38.12287 -36.87779 -34.53222 -32.00092 -30.96596 -29.18717 -26.24572 -24.52135 -23.09993 -20.75391 -20.10974 -18.09243 -17.28136 -16.34732 -15.79356 -15.38850 -14.77246 -14.41575 -14.27351 -13.94585 -13.64174 -13.19023 -12.72560 -12.56097 -12.16048 -11.57935 -11.38304 -10.96993 -10.83123 -10.48225 -10.32602 -9.75461 -9.17635 -8.93581 -8.64777 -8.22102 -7.64865 -6.38350 -4.45301 1.05220 1.68401 2.87116 3.02737 3.16057 3.19014 4.06638 4.08959 4.43168 4.84484 4.91321 5.23795 5.30996 5.36777 5.68896 5.73531 6.04659 6.16491 6.23840 6.43648 6.65434 6.69842 7.00933 7.09538 7.24843 7.80225 7.86845 7.91487 8.07928 8.28693 8.67683 9.18532 10.73585 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.033820 B = 0.009442 C = 0.008346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.706730 B = 2964.690488 C = 3354.081854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.078 3.922 3 Si 0.870 3.130 4 H -0.273 1.273 5 H -0.257 1.257 6 H -0.288 1.288 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.198 3.802 10 H 0.058 0.942 11 N -0.849 5.849 12 C 0.025 3.975 13 C -0.111 4.111 14 C -0.112 4.112 15 C 0.060 3.940 16 O -0.501 6.501 17 C -0.086 4.086 18 C -0.180 4.180 19 C 0.394 3.606 20 O -0.480 6.480 21 H 0.269 0.731 22 H 0.321 0.679 23 H 0.333 0.667 24 H 0.133 0.867 25 H 0.125 0.875 26 H 0.383 0.617 27 H 0.131 0.869 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 -5.210 2.228 9.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.127 4.127 3 Si 0.698 3.302 4 H -0.199 1.199 5 H -0.182 1.182 6 H -0.215 1.215 7 C -0.594 4.594 8 H 0.097 0.903 9 C 0.089 3.911 10 H 0.075 0.925 11 N -0.383 5.383 12 C 0.024 3.976 13 C -0.129 4.129 14 C -0.130 4.130 15 C 0.017 3.983 16 O -0.310 6.310 17 C -0.105 4.105 18 C -0.181 4.181 19 C 0.254 3.746 20 O -0.355 6.355 21 H 0.079 0.921 22 H 0.137 0.863 23 H 0.146 0.854 24 H 0.151 0.849 25 H 0.143 0.857 26 H 0.238 0.762 27 H 0.149 0.851 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.385 -5.328 1.345 10.025 hybrid contribution -1.278 0.821 0.511 1.602 sum 7.107 -4.507 1.856 8.618 Atomic orbital electron populations 1.69878 1.06237 1.27511 1.48158 1.25019 0.94850 0.99016 0.93843 0.87049 0.80433 0.83840 0.78863 1.19916 1.18185 1.21477 1.21517 0.88901 0.95225 1.53743 0.90325 1.18619 0.94078 0.87120 0.91289 0.92476 1.59723 1.66872 1.05883 1.05819 1.20362 0.89408 0.96405 0.91390 1.20840 0.99641 0.93738 0.98717 1.21577 0.98556 0.95489 0.97411 1.18226 1.02090 0.85712 0.92318 1.84838 1.36304 1.13651 1.96194 1.21529 0.96315 0.94625 0.97994 1.20556 1.06177 0.95257 0.96154 1.24225 0.70399 0.94070 0.85865 1.90428 1.40682 1.68854 1.35505 0.92077 0.86260 0.85393 0.84903 0.85703 0.76246 0.85111 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.86 13.96 55.43 0.77 -24.08 15 2 C 0.08 2.03 5.47 -17.82 -0.10 1.93 15 3 Si 0.87 19.21 24.61 -169.99 -4.18 15.03 15 4 H -0.27 -5.79 7.01 56.52 0.40 -5.39 15 5 H -0.26 -5.44 6.54 56.52 0.37 -5.07 15 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.55 -13.93 9.29 -34.44 -0.32 -14.25 15 8 H 0.08 2.21 7.98 -52.49 -0.42 1.79 15 9 C 0.20 4.20 1.90 -70.01 -0.13 4.07 15 10 H 0.06 1.22 5.58 -51.93 -0.29 0.93 15 11 N -0.85 -16.72 8.76 -6.65 -0.06 -16.78 15 12 C 0.03 0.49 5.03 -104.13 -0.52 -0.03 15 13 C -0.11 -1.90 9.26 -39.67 -0.37 -2.27 15 14 C -0.11 -1.71 9.98 -39.32 -0.39 -2.10 15 15 C 0.06 0.95 6.70 -39.28 -0.26 0.69 15 16 O -0.50 -6.77 13.50 -19.46 -0.26 -7.04 15 17 C -0.09 -1.48 9.54 -38.94 -0.37 -1.86 15 18 C -0.18 -3.39 5.87 -105.08 -0.62 -4.01 15 19 C 0.39 7.52 10.90 34.36 0.37 7.89 15 20 O -0.48 -9.88 17.18 5.58 0.10 -9.78 15 21 H 0.27 7.12 8.31 -40.82 -0.34 6.78 15 22 H 0.32 6.49 4.30 -39.30 -0.17 6.32 15 23 H 0.33 6.13 7.20 -39.29 -0.28 5.85 15 24 H 0.13 2.09 6.29 -52.49 -0.33 1.76 15 25 H 0.13 1.58 8.06 -52.49 -0.42 1.15 15 26 H 0.38 3.32 9.06 45.56 0.41 3.73 15 27 H 0.13 2.18 7.66 -52.49 -0.40 1.78 15 28 H 0.11 2.06 6.41 -52.49 -0.34 1.73 15 LS Contribution 243.42 15.07 3.67 3.67 Total: -1.00 -29.58 243.42 -4.09 -33.66 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -1.41 Total: 15.26 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.71 Total: -9.94 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.72 Total: -40.87 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.17 Total: -16.82 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.18 Total: 15.03 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.58 -4.09 -33.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260128435.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.221 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds