Wall clock time and date at job start Mon Mar 30 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48505 * 109.47111 * 89.99875 * 3 2 1 5 5 H 1.48503 * 109.46598 * 209.99385 * 3 2 1 6 6 H 1.48495 * 109.47374 * 329.99328 * 3 2 1 7 7 C 1.37870 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00465 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99863 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.47255 * 300.00320 * 9 7 2 11 11 N 1.46898 * 109.46702 * 60.00377 * 9 7 2 12 12 C 1.50700 * 109.47145 * 180.02562 * 9 7 2 13 13 C 1.37939 * 120.02986 * 265.70849 * 12 9 7 14 14 C 1.38293 * 120.23130 * 180.02562 * 13 12 9 15 15 C 1.38896 * 120.29761 * 359.97438 * 14 13 12 16 16 O 1.35911 * 119.96810 * 179.97438 * 15 14 13 17 17 C 1.38388 * 120.05699 * 0.02562 * 15 14 13 18 18 C 1.39803 * 119.76505 * 359.68406 * 17 15 14 19 19 C 1.47182 * 120.14776 * 180.31477 * 18 17 15 20 20 O 1.21252 * 119.99412 * 5.08314 * 19 18 17 21 21 H 0.96996 * 119.99879 * 0.02562 * 1 2 3 22 22 H 1.00893 * 111.00352 * 296.04138 * 11 9 7 23 23 H 1.00895 * 111.00464 * 60.00337 * 11 9 7 24 24 H 1.07995 * 119.88410 * 359.97438 * 13 12 9 25 25 H 1.08000 * 119.84800 * 180.02562 * 14 13 12 26 26 H 0.96703 * 114.00008 * 90.00612 * 16 15 14 27 27 H 1.07998 * 120.11441 * 179.97438 * 17 15 14 28 28 H 1.08000 * 120.00111 * 185.08878 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4401 -0.6999 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8753 -0.6803 -0.8888 11 7 4.0007 -0.5013 1.2006 12 6 4.0139 -2.6148 0.0010 13 6 4.3278 -3.2361 1.1919 14 6 4.7897 -4.5396 1.1966 15 6 4.9407 -5.2338 0.0030 16 8 5.3956 -6.5145 0.0154 17 6 4.6294 -4.6222 -1.1987 18 6 4.1565 -3.3066 -1.2059 19 6 3.8163 -2.6504 -2.4786 20 8 3.8576 -3.2789 -3.5147 21 1 -0.4850 0.8400 -0.0004 22 1 3.7313 0.4710 1.1919 23 1 3.6769 -0.9587 2.0397 24 1 4.2133 -2.7024 2.1237 25 1 5.0332 -5.0202 2.1326 26 1 4.6969 -7.1794 0.0850 27 1 4.7468 -5.1610 -2.1273 28 1 3.5300 -1.6091 -2.4897 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260128435.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:23 Heat of formation + Delta-G solvation = -69.679489 kcal Electronic energy + Delta-G solvation = -14650.779273 eV Core-core repulsion = 12052.289878 eV Total energy + Delta-G solvation = -2598.489395 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.16943 -39.54647 -38.26042 -36.09302 -33.89570 -32.32406 -30.58577 -28.06009 -25.94340 -24.67700 -22.20045 -21.56069 -19.41363 -19.08512 -17.89801 -17.26661 -16.79217 -16.31719 -15.98527 -15.65525 -15.39627 -15.15673 -14.81524 -14.39064 -14.00540 -13.79944 -13.02708 -12.80225 -12.72954 -12.45202 -11.99951 -11.70279 -11.57556 -10.91322 -10.67213 -9.98452 -9.68581 -9.22825 -8.38640 -6.49327 -0.34622 0.35975 1.28370 1.37790 1.44190 1.45306 2.23017 2.73642 2.94454 3.17309 3.49863 3.81103 3.92788 4.07993 4.20848 4.34795 4.63814 4.80222 4.87088 5.00383 5.27519 5.34930 5.37327 5.58335 5.80618 6.03774 6.33274 6.40156 6.55778 6.70517 6.85765 7.18365 8.76909 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.033820 B = 0.009442 C = 0.008346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.706730 B = 2964.690488 C = 3354.081854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.253 1.253 5 H -0.240 1.240 6 H -0.296 1.296 7 C -0.548 4.548 8 H 0.035 0.965 9 C 0.205 3.795 10 H 0.057 0.943 11 N -0.837 5.837 12 C 0.001 3.999 13 C -0.114 4.114 14 C -0.101 4.101 15 C 0.075 3.925 16 O -0.502 6.502 17 C -0.096 4.096 18 C -0.195 4.195 19 C 0.395 3.605 20 O -0.500 6.500 21 H 0.269 0.731 22 H 0.320 0.680 23 H 0.342 0.658 24 H 0.146 0.854 25 H 0.160 0.840 26 H 0.408 0.592 27 H 0.133 0.867 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.128 -5.585 3.431 11.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.176 4.176 3 Si 0.756 3.244 4 H -0.178 1.178 5 H -0.163 1.163 6 H -0.224 1.224 7 C -0.587 4.587 8 H 0.053 0.947 9 C 0.095 3.905 10 H 0.075 0.925 11 N -0.372 5.372 12 C 0.000 4.000 13 C -0.132 4.132 14 C -0.120 4.120 15 C 0.030 3.970 16 O -0.315 6.315 17 C -0.115 4.115 18 C -0.196 4.196 19 C 0.257 3.743 20 O -0.377 6.377 21 H 0.079 0.921 22 H 0.136 0.864 23 H 0.155 0.845 24 H 0.164 0.836 25 H 0.177 0.823 26 H 0.267 0.733 27 H 0.151 0.849 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.274 -5.733 2.571 12.043 hybrid contribution -1.859 0.740 0.166 2.008 sum 8.415 -4.992 2.737 10.160 Atomic orbital electron populations 1.70032 1.08261 1.28456 1.50525 1.25836 0.95432 1.02829 0.93522 0.86061 0.79511 0.78916 0.79951 1.17845 1.16348 1.22352 1.21682 0.91195 0.93389 1.52466 0.94654 1.18424 0.91272 0.88939 0.91875 0.92545 1.59674 1.66195 1.05692 1.05593 1.20261 0.91497 0.95708 0.92566 1.21041 0.99292 0.94625 0.98291 1.21878 0.96845 0.94569 0.98660 1.18263 1.00221 0.86649 0.91833 1.84779 1.37501 1.13133 1.96048 1.21643 0.96703 0.94124 0.99021 1.20546 1.07267 0.96122 0.95684 1.24361 0.69680 0.94257 0.85989 1.90411 1.41860 1.69255 1.36155 0.92143 0.86397 0.84467 0.83635 0.82263 0.73328 0.84934 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 13.96 21.45 0.30 -53.76 15 2 C 0.02 1.26 5.47 84.65 0.46 1.72 15 3 Si 0.93 39.07 24.61 68.60 1.69 40.76 15 4 H -0.25 -9.81 7.01 99.48 0.70 -9.11 15 5 H -0.24 -9.33 6.54 99.48 0.65 -8.67 15 6 H -0.30 -12.80 7.11 99.48 0.71 -12.09 15 7 C -0.55 -27.90 9.29 25.60 0.24 -27.66 15 8 H 0.04 2.06 7.98 -2.91 -0.02 2.04 15 9 C 0.20 8.50 1.90 43.43 0.08 8.58 15 10 H 0.06 2.35 5.58 -2.39 -0.01 2.34 15 11 N -0.84 -31.15 8.76 -174.95 -1.53 -32.69 15 12 C 0.00 0.02 5.03 -19.55 -0.10 -0.08 15 13 C -0.11 -3.64 9.26 22.21 0.21 -3.43 15 14 C -0.10 -2.74 9.98 22.44 0.22 -2.52 15 15 C 0.07 2.14 6.70 22.46 0.15 2.29 15 16 O -0.50 -11.72 13.50 -92.55 -1.25 -12.97 15 17 C -0.10 -3.19 9.54 22.68 0.22 -2.97 15 18 C -0.19 -7.24 5.87 -20.16 -0.12 -7.36 15 19 C 0.39 15.22 10.90 70.17 0.76 15.99 15 20 O -0.50 -20.80 17.18 -2.94 -0.05 -20.85 15 21 H 0.27 14.64 8.31 -92.71 -0.77 13.87 15 22 H 0.32 12.05 4.30 -89.70 -0.39 11.67 15 23 H 0.34 11.80 7.20 -89.70 -0.65 11.15 15 24 H 0.15 4.18 6.29 -2.91 -0.02 4.16 15 25 H 0.16 3.23 8.06 -2.91 -0.02 3.20 15 26 H 0.41 5.47 9.06 -74.06 -0.67 4.80 15 27 H 0.13 4.28 7.66 -2.91 -0.02 4.26 15 28 H 0.12 4.31 6.41 -2.91 -0.02 4.30 15 Total: -1.00 -63.78 243.42 0.75 -63.04 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -0.54 Total: 31.91 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 2.13 Total: -15.45 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -1.23 Total: -86.44 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -1.30 Total: -33.82 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.69 Total: 40.76 kcal Total: -63.78 0.75 -63.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260128435.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.643 kcal (2) G-P(sol) polarization free energy of solvation -63.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds