Wall clock time and date at job start Mon Mar 30 2020 02:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39756 * 120.18314 * 80.55577 * 3 2 1 5 5 C 1.37794 * 119.94470 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.84326 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47337 * 89.99953 * 6 5 4 8 8 H 1.08006 * 119.99789 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00402 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99696 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00142 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47089 * 60.00163 * 11 9 7 13 13 H 1.48496 * 109.47125 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47158 * 300.00179 * 11 9 7 15 15 C 1.38525 * 120.31264 * 359.97438 * 5 4 3 16 16 C 1.38262 * 120.36956 * 0.02562 * 15 5 4 17 17 F 1.35094 * 119.97536 * 179.97438 * 16 15 5 18 18 C 1.38858 * 120.04510 * 359.71361 * 16 15 5 19 19 O 1.35762 * 120.15188 * 180.28429 * 18 16 15 20 20 H 1.08000 * 120.02470 * 359.97438 * 4 3 2 21 21 H 1.08996 * 109.47307 * 210.00244 * 6 5 4 22 22 H 1.09003 * 109.47141 * 330.00096 * 6 5 4 23 23 H 0.97002 * 119.99968 * 180.02562 * 10 9 7 24 24 H 1.07996 * 119.81810 * 179.97438 * 15 5 4 25 25 H 0.96702 * 113.99837 * 270.27162 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 -0.1973 -1.1917 5 6 4.6486 -0.1962 -1.1860 6 6 5.4041 -0.4105 -2.4722 7 6 5.6558 0.9196 -3.1345 8 1 5.3036 1.8291 -2.6705 9 6 6.3358 0.9756 -4.3326 10 7 6.7643 -0.1320 -4.8978 11 14 6.6472 2.6242 -5.1538 12 1 7.4473 3.4857 -4.2467 13 1 7.3917 2.4131 -6.4211 14 1 5.3497 3.2843 -5.4465 15 6 5.3427 0.0008 -0.0035 16 6 4.6606 0.1978 1.1830 17 9 5.3455 0.3887 2.3316 18 6 3.2721 0.2051 1.1937 19 8 2.6001 0.4041 2.3564 20 1 2.7342 -0.3517 -2.1162 21 1 6.3563 -0.8956 -2.2579 22 1 4.8161 -1.0423 -3.1380 23 1 7.2430 -0.0926 -5.7405 24 1 6.4227 -0.0004 -0.0081 25 1 2.4057 -0.4090 2.8424 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260165122.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:06 Heat of formation + Delta-G solvation = -45.807239 kcal Electronic energy + Delta-G solvation = -13789.570792 eV Core-core repulsion = 11068.656270 eV Total energy + Delta-G solvation = -2720.914522 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.71197 -39.64838 -37.00725 -36.30310 -33.35076 -31.20210 -30.52450 -27.00304 -24.04612 -23.42066 -21.38083 -18.86914 -17.87905 -16.73799 -16.47719 -15.89331 -15.84485 -15.00068 -14.64907 -13.98870 -13.58693 -13.19315 -13.08947 -12.68704 -12.57172 -12.35481 -11.78342 -11.31705 -11.30649 -10.76693 -10.69224 -10.63442 -9.86077 -9.64135 -8.68242 -8.56290 -8.16693 -6.19475 -4.25016 0.80909 1.30083 2.74481 3.06848 3.25277 3.30188 3.33395 3.78912 3.83751 4.09021 4.34259 4.57640 5.14243 5.16732 5.24033 5.54985 5.72957 5.99997 6.19157 6.49072 6.60353 6.91039 7.30864 7.44845 7.51040 7.58720 7.75165 8.08736 8.79569 9.40661 10.90188 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.030810 B = 0.007544 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.592002 B = 3710.814451 C = 4182.755990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.271 3.729 3 C -0.035 4.035 4 C -0.067 4.067 5 C -0.012 4.012 6 C 0.047 3.953 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.063 3.937 10 N -0.891 5.891 11 Si 0.897 3.103 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.275 1.275 15 C -0.112 4.112 16 C 0.074 3.926 17 F -0.134 7.134 18 C 0.088 3.912 19 O -0.485 6.485 20 H 0.142 0.858 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.265 0.735 24 H 0.146 0.854 25 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.907 -1.970 9.464 10.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.044 4.044 3 C -0.039 4.039 4 C -0.088 4.088 5 C -0.013 4.013 6 C 0.010 3.990 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.140 4.140 10 N -0.529 5.529 11 Si 0.725 3.275 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.131 4.131 16 C 0.054 3.946 17 F -0.113 7.113 18 C 0.039 3.961 19 O -0.294 6.294 20 H 0.160 0.840 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.164 0.836 25 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -4.522 -1.442 9.198 10.350 hybrid contribution 0.766 0.503 -0.121 0.924 sum -3.755 -0.939 9.077 9.868 Atomic orbital electron populations 1.81179 1.11928 1.09200 1.07696 1.25360 0.92298 0.93400 0.93333 1.16170 0.84629 1.08567 0.94503 1.21195 0.94186 0.97465 0.95928 1.20573 0.92770 0.91160 0.96772 1.18457 0.95248 0.98231 0.87033 1.20976 1.37093 0.91991 1.05979 0.92173 1.24982 0.95267 0.96766 0.96963 1.69927 1.37697 1.26822 1.18410 0.86561 0.78585 0.83690 0.78710 1.20016 1.21168 1.20039 1.21363 1.01834 0.99857 0.90087 1.17820 0.88444 1.05405 0.82942 1.91481 1.79354 1.92835 1.47624 1.18078 0.88112 1.04136 0.85723 1.84842 1.76282 1.35457 1.32833 0.83977 0.94388 0.94350 0.92525 0.83623 0.75530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.15 18.54 41.83 0.78 -6.37 15 2 C 0.27 4.21 14.87 -22.47 -0.33 3.88 15 3 C -0.03 -0.52 5.75 -106.71 -0.61 -1.13 15 4 C -0.07 -1.07 9.39 -39.18 -0.37 -1.44 15 5 C -0.01 -0.22 5.06 -104.68 -0.53 -0.75 15 6 C 0.05 1.04 5.09 -29.03 -0.15 0.89 15 7 C -0.52 -13.16 9.09 -34.44 -0.31 -13.47 15 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 15 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 10 N -0.89 -24.39 13.29 55.43 0.74 -23.65 15 11 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 15 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 13 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 15 C -0.11 -1.81 9.66 -39.47 -0.38 -2.19 15 16 C 0.07 1.12 7.30 -39.34 -0.29 0.83 15 17 F -0.13 -2.03 17.11 2.25 0.04 -1.99 15 18 C 0.09 1.28 6.72 -38.66 -0.26 1.02 15 19 O -0.48 -6.32 12.80 -19.00 -0.24 -6.57 15 20 H 0.14 2.18 8.06 -52.49 -0.42 1.75 15 21 H 0.04 0.87 8.08 -51.93 -0.42 0.45 15 22 H 0.04 0.88 8.08 -51.93 -0.42 0.46 15 23 H 0.27 6.92 8.31 -40.82 -0.34 6.58 15 24 H 0.15 2.24 8.06 -52.49 -0.42 1.82 15 25 H 0.39 3.15 9.06 45.56 0.41 3.56 15 LS Contribution 248.38 15.07 3.74 3.74 Total: -1.00 -28.11 248.38 -4.12 -32.23 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -0.81 Total: -1.79 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -3.33 Total: -10.83 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 1.51 Total: -30.02 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.24 Total: -6.57 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.11 -4.12 -32.23 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260165122.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.578 kcal (2) G-P(sol) polarization free energy of solvation -28.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds