Wall clock time and date at job start Mon Mar 30 2020 02:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39756 * 120.18314 * 80.55577 * 3 2 1 5 5 C 1.37794 * 119.94470 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.84326 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47337 * 89.99953 * 6 5 4 8 8 H 1.08006 * 119.99789 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00402 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99696 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00142 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47089 * 60.00163 * 11 9 7 13 13 H 1.48496 * 109.47125 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47158 * 300.00179 * 11 9 7 15 15 C 1.38525 * 120.31264 * 359.97438 * 5 4 3 16 16 C 1.38262 * 120.36956 * 0.02562 * 15 5 4 17 17 F 1.35094 * 119.97536 * 179.97438 * 16 15 5 18 18 C 1.38858 * 120.04510 * 359.71361 * 16 15 5 19 19 O 1.35762 * 120.15188 * 180.28429 * 18 16 15 20 20 H 1.08000 * 120.02470 * 359.97438 * 4 3 2 21 21 H 1.08996 * 109.47307 * 210.00244 * 6 5 4 22 22 H 1.09003 * 109.47141 * 330.00096 * 6 5 4 23 23 H 0.97002 * 119.99968 * 180.02562 * 10 9 7 24 24 H 1.07996 * 119.81810 * 179.97438 * 15 5 4 25 25 H 0.96702 * 113.99837 * 270.27162 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 -0.1973 -1.1917 5 6 4.6486 -0.1962 -1.1860 6 6 5.4041 -0.4105 -2.4722 7 6 5.6558 0.9196 -3.1345 8 1 5.3036 1.8291 -2.6705 9 6 6.3358 0.9756 -4.3326 10 7 6.7643 -0.1320 -4.8978 11 14 6.6472 2.6242 -5.1538 12 1 7.4473 3.4857 -4.2467 13 1 7.3917 2.4131 -6.4211 14 1 5.3497 3.2843 -5.4465 15 6 5.3427 0.0008 -0.0035 16 6 4.6606 0.1978 1.1830 17 9 5.3455 0.3887 2.3316 18 6 3.2721 0.2051 1.1937 19 8 2.6001 0.4041 2.3564 20 1 2.7342 -0.3517 -2.1162 21 1 6.3563 -0.8956 -2.2579 22 1 4.8161 -1.0423 -3.1380 23 1 7.2430 -0.0926 -5.7405 24 1 6.4227 -0.0004 -0.0081 25 1 2.4057 -0.4090 2.8424 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260165122.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:06 Heat of formation + Delta-G solvation = -62.955738 kcal Electronic energy + Delta-G solvation = -13790.314407 eV Core-core repulsion = 11068.656270 eV Total energy + Delta-G solvation = -2721.658136 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.91675 -40.89060 -38.21210 -37.58711 -35.17342 -32.69096 -31.88531 -28.64257 -25.42525 -25.01540 -22.76625 -20.05518 -19.15256 -18.43700 -17.96678 -17.13440 -17.07448 -16.52306 -16.13055 -15.23308 -14.84579 -14.61880 -14.39273 -14.33566 -13.97098 -13.70327 -13.36609 -13.02381 -12.75444 -12.43930 -12.42526 -11.83098 -11.58939 -11.45549 -10.54516 -9.94488 -9.50074 -8.16655 -6.27690 -0.43754 0.05312 1.47221 1.47525 1.49635 1.55170 1.79504 2.42882 2.54705 2.65109 2.91770 3.16904 3.36542 3.89152 3.92650 4.26713 4.46335 4.77931 4.91092 5.08206 5.19404 5.42128 5.64523 5.79060 5.80711 6.18712 6.32325 6.60837 6.85182 7.41279 8.92444 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.030810 B = 0.007544 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.592002 B = 3710.814451 C = 4182.755990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.287 3.713 3 C -0.031 4.031 4 C -0.059 4.059 5 C -0.032 4.032 6 C 0.054 3.946 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.955 3.045 12 H -0.269 1.269 13 H -0.286 1.286 14 H -0.271 1.271 15 C -0.104 4.104 16 C 0.074 3.926 17 F -0.131 7.131 18 C 0.115 3.885 19 O -0.490 6.490 20 H 0.146 0.854 21 H 0.021 0.979 22 H 0.022 0.978 23 H 0.265 0.735 24 H 0.149 0.851 25 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 -1.209 10.673 11.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.027 4.027 3 C -0.035 4.035 4 C -0.079 4.079 5 C -0.033 4.033 6 C 0.017 3.983 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.780 3.220 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.196 1.196 15 C -0.124 4.124 16 C 0.054 3.946 17 F -0.110 7.110 18 C 0.066 3.934 19 O -0.303 6.303 20 H 0.164 0.836 21 H 0.040 0.960 22 H 0.040 0.960 23 H 0.074 0.926 24 H 0.167 0.833 25 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -5.099 -0.691 10.436 11.635 hybrid contribution 0.899 0.240 -0.370 1.001 sum -4.200 -0.451 10.066 10.916 Atomic orbital electron populations 1.81208 1.12513 1.10022 1.08348 1.25259 0.92090 0.92709 0.92691 1.15981 0.84234 1.09034 0.94255 1.21126 0.93482 0.96697 0.96620 1.20079 0.93252 0.94371 0.95552 1.18190 0.94784 0.96545 0.88806 1.21382 1.36184 0.93328 1.06026 0.92167 1.25750 0.95388 0.99708 0.97827 1.70034 1.38905 1.28689 1.18885 0.85646 0.78515 0.80070 0.77742 1.19386 1.21144 1.19566 1.21317 1.02090 0.99007 0.89966 1.17659 0.88584 1.05727 0.82594 1.91494 1.79366 1.92840 1.47299 1.18008 0.87830 1.01466 0.86122 1.84780 1.75863 1.37430 1.32268 0.83650 0.96044 0.96000 0.92623 0.83305 0.72477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.13 18.54 19.00 0.35 -13.78 15 2 C 0.29 8.28 14.87 88.33 1.31 9.59 15 3 C -0.03 -0.85 5.75 -21.22 -0.12 -0.98 15 4 C -0.06 -1.80 9.39 22.53 0.21 -1.59 15 5 C -0.03 -1.13 5.06 -19.90 -0.10 -1.23 15 6 C 0.05 2.41 5.09 29.10 0.15 2.56 15 7 C -0.53 -26.83 9.09 25.60 0.23 -26.60 15 8 H 0.06 2.97 7.74 -2.91 -0.02 2.95 15 9 C 0.01 0.64 5.46 84.66 0.46 1.11 15 10 N -0.93 -51.45 13.29 21.45 0.28 -51.17 15 11 Si 0.95 41.36 29.54 68.60 2.03 43.39 15 12 H -0.27 -11.29 7.11 99.48 0.71 -10.59 15 13 H -0.29 -12.27 7.11 99.48 0.71 -11.56 15 14 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 15 C -0.10 -3.23 9.66 22.34 0.22 -3.02 15 16 C 0.07 2.07 7.30 22.42 0.16 2.23 15 17 F -0.13 -3.62 17.11 44.97 0.77 -2.85 15 18 C 0.11 2.99 6.72 22.87 0.15 3.14 15 19 O -0.49 -11.02 12.80 -90.89 -1.16 -12.18 15 20 H 0.15 4.34 8.06 -2.91 -0.02 4.31 15 21 H 0.02 1.01 8.08 -2.39 -0.02 0.99 15 22 H 0.02 1.03 8.08 -2.39 -0.02 1.01 15 23 H 0.26 14.03 8.31 -92.71 -0.77 13.26 15 24 H 0.15 4.46 8.06 -2.91 -0.02 4.44 15 25 H 0.41 5.07 9.06 -74.06 -0.67 4.40 15 Total: -1.00 -58.41 248.38 5.52 -52.89 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: 0.57 Total: -1.51 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 2.68 Total: -14.79 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: 0.64 Total: -64.94 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -1.16 Total: -12.18 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.77 Total: -2.85 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -58.41 5.52 -52.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260165122.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.063 kcal (2) G-P(sol) polarization free energy of solvation -58.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds