Wall clock time and date at job start Mon Mar 30 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00072 * 2 1 4 4 H 1.48490 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47092 * 300.00822 * 3 2 1 6 6 H 1.48500 * 109.47144 * 60.00101 * 3 2 1 7 7 C 1.37868 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00373 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47207 * 180.02562 * 9 7 2 11 11 N 1.29769 * 126.28758 * 269.68793 * 10 9 7 12 12 O 1.41354 * 109.74091 * 180.26553 * 11 10 9 13 13 C 1.34828 * 109.32539 * 359.97438 * 12 11 10 14 14 C 1.38915 * 133.43111 * 179.97438 * 13 12 11 15 15 C 1.38040 * 119.78120 * 179.97438 * 14 13 12 16 16 F 1.35104 * 119.72836 * 180.02562 * 15 14 13 17 17 C 1.39032 * 120.54722 * 0.04620 * 15 14 13 18 18 C 1.36562 * 120.48206 * 359.97438 * 17 15 14 19 19 C 1.39724 * 119.82569 * 0.02562 * 18 17 15 20 20 H 0.96997 * 119.99925 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46827 * 60.00399 * 9 7 2 22 22 H 1.08996 * 109.47278 * 300.00289 * 9 7 2 23 23 H 1.08000 * 120.10569 * 359.97438 * 14 13 12 24 24 H 1.07996 * 119.76031 * 179.97438 * 17 15 14 25 25 H 1.08004 * 120.08830 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 7 2.7251 -4.2320 -1.0465 12 8 3.6026 -5.2645 -0.6439 13 6 3.6481 -5.3116 0.7027 14 6 4.3317 -6.1137 1.6077 15 6 4.1670 -5.9120 2.9634 16 9 4.8328 -6.6924 3.8426 17 6 3.3214 -4.9126 3.4315 18 6 2.6410 -4.1148 2.5565 19 6 2.7944 -4.3034 1.1806 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 4.9898 -6.8926 1.2518 24 1 3.2017 -4.7662 4.4947 25 1 1.9861 -3.3401 2.9271 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260294222.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:21 Heat of formation + Delta-G solvation = 5.170833 kcal Electronic energy + Delta-G solvation = -13974.245459 eV Core-core repulsion = 11255.541513 eV Total energy + Delta-G solvation = -2718.703947 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.01548 -41.30287 -37.23281 -34.52227 -32.61702 -30.50896 -29.41719 -28.46077 -23.82291 -23.13627 -22.52744 -19.77335 -17.68947 -17.07899 -16.60929 -16.57288 -15.83652 -15.14580 -14.86846 -14.51607 -14.02835 -13.39600 -12.92332 -12.60587 -12.37877 -11.82658 -11.73533 -11.14570 -11.03225 -10.99513 -10.55113 -10.50677 -10.04838 -9.43576 -8.63036 -8.53638 -8.50756 -6.26202 -4.31725 0.77490 1.31947 2.57250 2.93237 3.20349 3.28777 3.33975 3.64827 4.21739 4.29838 4.67948 4.73650 4.77421 4.93366 5.11652 5.40626 5.66407 5.89671 5.97120 6.14236 6.28033 6.58060 6.75541 7.10420 7.17588 7.68498 7.86692 7.95759 8.70801 9.33776 10.84327 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.037642 B = 0.007419 C = 0.006797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.662938 B = 3773.195547 C = 4118.370160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.078 3.922 10 C 0.180 3.820 11 N -0.304 5.304 12 O -0.113 6.113 13 C 0.106 3.894 14 C -0.175 4.175 15 C 0.148 3.852 16 F -0.133 7.133 17 C -0.194 4.194 18 C 0.006 3.994 19 C -0.194 4.194 20 H 0.266 0.734 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.145 0.855 24 H 0.143 0.857 25 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 -8.439 6.863 11.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.560 4.560 8 H 0.079 0.921 9 C 0.040 3.960 10 C 0.000 4.000 11 N -0.053 5.053 12 O -0.117 6.117 13 C 0.051 3.949 14 C -0.195 4.195 15 C 0.128 3.872 16 F -0.112 7.112 17 C -0.213 4.213 18 C -0.014 4.014 19 C -0.198 4.198 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.162 0.838 24 H 0.161 0.839 25 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.996 -8.534 5.532 11.331 hybrid contribution 0.585 0.780 0.880 1.313 sum 5.581 -7.754 6.412 11.506 Atomic orbital electron populations 1.69942 1.06043 1.27373 1.49250 1.24946 0.94951 0.99420 0.94466 0.86355 0.80086 0.82749 0.77860 1.19550 1.20662 1.20649 1.20861 0.93218 0.88991 1.52906 0.92083 1.18177 0.90968 0.86492 1.00356 1.25716 0.93130 0.93535 0.87577 1.80033 1.06788 1.00584 1.17866 1.89142 1.57939 1.48607 1.15992 1.19853 0.94512 0.94514 0.86010 1.19587 1.06181 1.04135 0.89614 1.17289 0.93222 0.90809 0.85904 1.91508 1.78634 1.73061 1.67973 1.20683 1.01167 0.98089 1.01343 1.20434 0.94972 0.95962 0.90077 1.21045 1.03373 0.99627 0.95763 0.92411 0.93153 0.92901 0.83767 0.83930 0.83234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.52 13.29 55.43 0.74 -23.79 15 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 15 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 7 C -0.52 -13.81 9.09 -34.44 -0.31 -14.12 15 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 15 9 C 0.08 1.89 5.58 -29.03 -0.16 1.73 15 10 C 0.18 3.98 6.65 -80.12 -0.53 3.44 15 11 N -0.30 -6.87 12.81 34.90 0.45 -6.42 15 12 O -0.11 -2.32 12.06 7.66 0.09 -2.23 15 13 C 0.11 1.93 7.48 -38.48 -0.29 1.64 15 14 C -0.17 -2.57 10.04 -39.40 -0.40 -2.96 15 15 C 0.15 2.03 7.29 -39.36 -0.29 1.74 15 16 F -0.13 -1.71 17.26 2.25 0.04 -1.67 15 17 C -0.19 -2.56 9.95 -39.89 -0.40 -2.96 15 18 C 0.01 0.09 10.05 -39.63 -0.40 -0.31 15 19 C -0.19 -3.68 6.32 -105.15 -0.66 -4.35 15 20 H 0.27 6.92 8.31 -40.82 -0.34 6.58 15 21 H 0.05 1.30 8.14 -51.93 -0.42 0.87 15 22 H 0.05 1.26 8.14 -51.93 -0.42 0.83 15 23 H 0.14 1.77 8.06 -52.49 -0.42 1.34 15 24 H 0.14 1.47 8.06 -52.49 -0.42 1.04 15 25 H 0.15 2.14 8.06 -52.48 -0.42 1.72 15 LS Contribution 240.69 15.07 3.63 3.63 Total: -1.00 -28.14 240.69 -5.27 -33.41 By element: Atomic # 1 Polarization: -2.30 SS G_CDS: -1.65 Total: -3.95 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -3.54 Total: -14.50 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 1.18 Total: -30.21 kcal Atomic # 8 Polarization: -2.32 SS G_CDS: 0.09 Total: -2.23 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.14 -5.27 -33.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260294222.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.579 kcal (2) G-P(sol) polarization free energy of solvation -28.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds