Wall clock time and date at job start Mon Mar 30 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00072 * 2 1 4 4 H 1.48490 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47092 * 300.00822 * 3 2 1 6 6 H 1.48500 * 109.47144 * 60.00101 * 3 2 1 7 7 C 1.37868 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00373 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47207 * 180.02562 * 9 7 2 11 11 N 1.29769 * 126.28758 * 269.68793 * 10 9 7 12 12 O 1.41354 * 109.74091 * 180.26553 * 11 10 9 13 13 C 1.34828 * 109.32539 * 359.97438 * 12 11 10 14 14 C 1.38915 * 133.43111 * 179.97438 * 13 12 11 15 15 C 1.38040 * 119.78120 * 179.97438 * 14 13 12 16 16 F 1.35104 * 119.72836 * 180.02562 * 15 14 13 17 17 C 1.39032 * 120.54722 * 0.04620 * 15 14 13 18 18 C 1.36562 * 120.48206 * 359.97438 * 17 15 14 19 19 C 1.39724 * 119.82569 * 0.02562 * 18 17 15 20 20 H 0.96997 * 119.99925 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46827 * 60.00399 * 9 7 2 22 22 H 1.08996 * 109.47278 * 300.00289 * 9 7 2 23 23 H 1.08000 * 120.10569 * 359.97438 * 14 13 12 24 24 H 1.07996 * 119.76031 * 179.97438 * 17 15 14 25 25 H 1.08004 * 120.08830 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 7 2.7251 -4.2320 -1.0465 12 8 3.6026 -5.2645 -0.6439 13 6 3.6481 -5.3116 0.7027 14 6 4.3317 -6.1137 1.6077 15 6 4.1670 -5.9120 2.9634 16 9 4.8328 -6.6924 3.8426 17 6 3.3214 -4.9126 3.4315 18 6 2.6410 -4.1148 2.5565 19 6 2.7944 -4.3034 1.1806 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 4.9898 -6.8926 1.2518 24 1 3.2017 -4.7662 4.4947 25 1 1.9861 -3.3401 2.9271 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260294222.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:21 Heat of formation + Delta-G solvation = -10.734381 kcal Electronic energy + Delta-G solvation = -13974.935161 eV Core-core repulsion = 11255.541513 eV Total energy + Delta-G solvation = -2719.393648 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.09865 -42.77236 -38.52485 -36.28961 -34.49011 -31.77986 -30.76520 -30.35834 -25.77855 -24.43162 -23.82982 -21.35897 -19.02737 -18.67931 -18.39353 -17.75351 -17.16433 -16.62625 -16.47041 -15.93116 -15.29466 -14.60913 -14.51952 -14.41913 -14.01483 -13.55346 -13.00053 -12.91282 -12.76465 -12.30454 -12.25613 -12.19875 -11.96844 -11.30031 -10.66789 -9.85522 -9.79784 -8.30116 -6.43071 -0.53470 0.08818 1.01448 1.41039 1.43708 1.49787 1.56072 2.34350 2.41732 2.95081 3.04308 3.24677 3.38027 3.49190 3.86909 4.16155 4.29271 4.60778 4.82582 4.83957 4.99004 5.12148 5.17781 5.22096 5.58816 5.61616 5.94646 6.28372 6.63853 7.26259 8.81117 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.037642 B = 0.007419 C = 0.006797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.662938 B = 3773.195547 C = 4118.370160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.537 4.537 8 H 0.052 0.948 9 C 0.087 3.913 10 C 0.167 3.833 11 N -0.337 5.337 12 O -0.117 6.117 13 C 0.088 3.912 14 C -0.168 4.168 15 C 0.163 3.837 16 F -0.121 7.121 17 C -0.170 4.170 18 C -0.001 4.001 19 C -0.217 4.217 20 H 0.271 0.729 21 H 0.023 0.977 22 H 0.053 0.947 23 H 0.170 0.830 24 H 0.182 0.818 25 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.256 -8.719 8.938 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.180 4.180 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.070 0.930 9 C 0.049 3.951 10 C -0.012 4.012 11 N -0.085 5.085 12 O -0.124 6.124 13 C 0.033 3.967 14 C -0.188 4.188 15 C 0.142 3.858 16 F -0.099 7.099 17 C -0.189 4.189 18 C -0.021 4.021 19 C -0.221 4.221 20 H 0.080 0.920 21 H 0.041 0.959 22 H 0.071 0.929 23 H 0.188 0.812 24 H 0.199 0.801 25 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.251 -8.814 7.616 13.220 hybrid contribution 0.239 0.742 0.339 0.850 sum 6.490 -8.072 7.956 13.061 Atomic orbital electron populations 1.70029 1.07361 1.28511 1.49751 1.25743 0.95749 1.02653 0.93823 0.85361 0.78644 0.78586 0.78263 1.19490 1.20369 1.19276 1.21053 0.92926 0.90322 1.53252 0.93018 1.17874 0.91135 0.87092 0.98963 1.25437 0.93106 0.93273 0.89393 1.79916 1.07874 1.01734 1.18968 1.89063 1.57659 1.47949 1.17738 1.20187 0.95704 0.95584 0.85202 1.19864 1.05559 1.03800 0.89560 1.17296 0.92506 0.90418 0.85584 1.91554 1.78263 1.72677 1.67425 1.21044 0.98867 0.96140 1.02825 1.20612 0.95758 0.96920 0.88841 1.21075 1.04376 1.00219 0.96407 0.91970 0.95853 0.92908 0.81210 0.80082 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.23 13.29 21.44 0.28 -50.94 15 2 C 0.02 1.11 5.46 84.65 0.46 1.57 15 3 Si 0.97 42.01 29.54 68.60 2.03 44.04 15 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 15 6 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15 7 C -0.54 -29.10 9.09 25.60 0.23 -28.87 15 8 H 0.05 2.84 7.74 -2.91 -0.02 2.81 15 9 C 0.09 4.42 5.58 29.10 0.16 4.58 15 10 C 0.17 7.62 6.65 45.03 0.30 7.92 15 11 N -0.34 -15.82 12.81 -43.48 -0.56 -16.38 15 12 O -0.12 -4.89 12.06 29.80 0.36 -4.53 15 13 C 0.09 3.11 7.48 22.98 0.17 3.28 15 14 C -0.17 -4.46 10.04 22.38 0.22 -4.24 15 15 C 0.16 3.81 7.29 22.41 0.16 3.97 15 16 F -0.12 -2.55 17.26 44.97 0.78 -1.77 15 17 C -0.17 -3.83 9.95 22.07 0.22 -3.61 15 18 C 0.00 -0.04 10.05 22.24 0.22 0.18 15 19 C -0.22 -8.18 6.32 -20.21 -0.13 -8.30 15 20 H 0.27 14.12 8.31 -92.71 -0.77 13.35 15 21 H 0.02 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.05 2.61 8.14 -2.39 -0.02 2.59 15 23 H 0.17 3.58 8.06 -2.91 -0.02 3.56 15 24 H 0.18 2.72 8.06 -2.91 -0.02 2.69 15 25 H 0.16 4.29 8.06 -2.91 -0.02 4.27 15 Total: -1.00 -61.14 240.69 6.14 -55.00 By element: Atomic # 1 Polarization: -3.12 SS G_CDS: 1.22 Total: -1.90 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 2.03 Total: -23.51 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -0.27 Total: -67.32 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: 0.36 Total: -4.53 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.78 Total: -1.77 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -61.14 6.14 -55.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260294222.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.270 kcal (2) G-P(sol) polarization free energy of solvation -61.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds