Wall clock time and date at job start Mon Mar 30 2020 03:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 120.00005 * 2 1 4 4 H 1.48499 * 109.47593 * 275.41478 * 3 2 1 5 5 H 1.48498 * 109.47087 * 35.41488 * 3 2 1 6 6 H 1.48504 * 109.47340 * 155.41427 * 3 2 1 7 7 C 1.39933 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99522 * 341.73084 * 7 2 1 9 9 C 1.41398 * 120.00432 * 161.73281 * 7 2 1 10 10 C 1.40786 * 120.20789 * 330.18193 * 9 7 2 11 11 C 1.37646 * 119.89334 * 179.78865 * 10 9 7 12 12 C 1.38516 * 120.32729 * 0.49323 * 11 10 9 13 13 C 1.50701 * 119.78873 * 179.76220 * 12 11 10 14 14 C 1.50695 * 109.47215 * 264.72276 * 13 12 11 15 15 O 1.20831 * 119.99863 * 359.72841 * 14 13 12 16 16 O 1.34227 * 120.00124 * 180.02562 * 14 13 12 17 17 C 1.39297 * 120.42219 * 359.48333 * 12 11 10 18 18 N 1.39685 * 119.95272 * 180.25478 * 17 12 11 19 19 C 1.38312 * 120.09897 * 0.27794 * 17 12 11 20 20 H 0.97003 * 120.00016 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.05470 * 0.05063 * 10 9 7 22 22 H 1.08003 * 119.83736 * 180.25390 * 11 10 9 23 23 H 1.09000 * 109.47106 * 144.72765 * 13 12 11 24 24 H 1.09002 * 109.47428 * 24.72427 * 13 12 11 25 25 H 0.96704 * 117.00478 * 180.02562 * 16 14 13 26 26 H 0.97004 * 119.99582 * 0.02562 * 18 17 12 27 27 H 0.96994 * 120.00546 * 180.02562 * 18 17 12 28 28 H 1.07990 * 120.16467 * 179.97438 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1126 -1.3938 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4099 0.5825 7 6 2.0080 -1.2118 -0.0005 8 1 1.5088 -2.1237 0.2923 9 6 3.3685 -1.2425 -0.3844 10 6 3.8629 -0.3101 -1.3162 11 6 5.1894 -0.3431 -1.6820 12 6 6.0394 -1.2962 -1.1454 13 6 7.4884 -1.3246 -1.5584 14 6 7.6725 -2.3176 -2.6769 15 8 6.7253 -2.9421 -3.0923 16 8 8.8899 -2.5127 -3.2076 17 6 5.5647 -2.2248 -0.2220 18 7 6.4316 -3.1783 0.3169 19 6 4.2360 -2.2046 0.1616 20 1 -0.4850 0.8401 0.0004 21 1 3.2033 0.4326 -1.7402 22 1 5.5686 0.3752 -2.3938 23 1 8.1031 -1.6179 -0.7074 24 1 7.7886 -0.3337 -1.8992 25 1 8.9585 -3.1595 -3.9231 26 1 7.3636 -3.1931 0.0483 27 1 6.1018 -3.8256 0.9596 28 1 3.8667 -2.9243 0.8771 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260310294.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:43 Heat of formation + Delta-G solvation = -80.841088 kcal Electronic energy + Delta-G solvation = -14572.422109 eV Core-core repulsion = 11973.448710 eV Total energy + Delta-G solvation = -2598.973398 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.93824 -38.07227 -35.74902 -34.44354 -32.88241 -31.78656 -28.55518 -27.59764 -24.40289 -21.58854 -21.21790 -19.88521 -17.73733 -17.45546 -16.38759 -16.12492 -15.46556 -15.28248 -14.65558 -14.21976 -13.32346 -12.90644 -12.75750 -12.55592 -11.94690 -11.83427 -11.64293 -11.16904 -10.92254 -10.87408 -10.40222 -10.15123 -9.85989 -9.54306 -9.45506 -9.01004 -7.56194 -6.90996 -6.52708 -4.45921 2.54510 2.60924 2.94113 3.15374 3.25688 3.36839 3.55880 4.04751 4.56309 4.68980 5.39668 5.46347 5.51384 5.84483 6.02602 6.12235 6.61002 6.76355 6.79461 6.84575 7.05815 7.28122 7.57590 7.68105 7.79734 8.00077 8.26725 8.35553 8.44656 8.57320 8.76095 8.88857 10.11420 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.045179 B = 0.008214 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.610343 B = 3408.028312 C = 3646.274981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.085 3.915 3 Si 0.916 3.084 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.243 1.243 7 C -0.446 4.446 8 H 0.089 0.911 9 C 0.131 3.869 10 C -0.270 4.270 11 C -0.028 4.028 12 C -0.275 4.275 13 C -0.037 4.037 14 C 0.461 3.539 15 O -0.495 6.495 16 O -0.531 6.531 17 C 0.260 3.740 18 N -0.890 5.890 19 C -0.284 4.284 20 H 0.285 0.715 21 H 0.099 0.901 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.097 0.903 25 H 0.399 0.601 26 H 0.381 0.619 27 H 0.389 0.611 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.009 -0.680 -1.523 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.134 4.134 3 Si 0.743 3.257 4 H -0.197 1.197 5 H -0.222 1.222 6 H -0.166 1.166 7 C -0.475 4.475 8 H 0.107 0.893 9 C 0.127 3.873 10 C -0.290 4.290 11 C -0.047 4.047 12 C -0.280 4.280 13 C -0.074 4.074 14 C 0.302 3.698 15 O -0.380 6.380 16 O -0.344 6.344 17 C 0.158 3.842 18 N -0.431 5.431 19 C -0.308 4.308 20 H 0.095 0.905 21 H 0.117 0.883 22 H 0.111 0.889 23 H 0.108 0.892 24 H 0.115 0.885 25 H 0.257 0.743 26 H 0.208 0.792 27 H 0.216 0.784 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.359 -0.426 -1.326 12.437 hybrid contribution 0.418 -0.031 -0.457 0.620 sum 12.777 -0.457 -1.783 12.909 Atomic orbital electron populations 1.69710 1.08195 1.30246 1.35164 1.26188 0.94679 1.01910 0.90647 0.86248 0.81294 0.79421 0.78731 1.19702 1.22159 1.16591 1.19511 0.93270 0.96048 1.38627 0.89268 1.17463 0.92406 0.89479 0.87923 1.20852 0.95322 1.06239 1.06553 1.20191 0.93246 0.95443 0.95842 1.17952 0.93059 1.06043 1.10948 1.19823 0.97391 0.96815 0.93407 1.24408 0.79409 0.82649 0.83330 1.90735 1.41434 1.46096 1.59766 1.84594 1.35460 1.61774 1.52554 1.17252 0.89655 0.86911 0.90389 1.42437 1.10949 1.37595 1.52071 1.20341 0.91275 1.08702 1.10484 0.90506 0.88340 0.88947 0.89230 0.88462 0.74334 0.79202 0.78367 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.90 13.93 55.55 0.77 -21.13 15 2 C 0.08 2.26 5.40 -17.35 -0.09 2.16 15 3 Si 0.92 21.13 24.52 -169.99 -4.17 16.96 15 4 H -0.27 -6.08 6.71 56.52 0.38 -5.70 15 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.24 -5.69 6.86 56.52 0.39 -5.30 15 7 C -0.45 -12.37 9.57 -37.75 -0.36 -12.73 15 8 H 0.09 2.59 8.06 -52.48 -0.42 2.16 15 9 C 0.13 3.43 5.10 -106.85 -0.55 2.88 15 10 C -0.27 -6.69 7.17 -38.84 -0.28 -6.97 15 11 C -0.03 -0.62 9.64 -39.70 -0.38 -1.01 15 12 C -0.28 -5.62 4.41 -104.13 -0.46 -6.08 15 13 C -0.04 -0.57 5.36 -29.04 -0.16 -0.73 15 14 C 0.46 7.36 8.32 36.00 0.30 7.66 15 15 O -0.50 -10.03 16.79 -18.75 -0.31 -10.35 15 16 O -0.53 -6.41 13.42 -39.25 -0.53 -6.94 15 17 C 0.26 5.50 6.72 -83.86 -0.56 4.93 15 18 N -0.89 -14.62 8.99 32.37 0.29 -14.33 15 19 C -0.28 -6.80 9.63 -38.67 -0.37 -7.18 15 20 H 0.28 6.96 8.30 -40.82 -0.34 6.62 15 21 H 0.10 2.44 4.72 -52.49 -0.25 2.19 15 22 H 0.09 1.77 8.06 -52.48 -0.42 1.35 15 23 H 0.09 1.18 6.79 -51.93 -0.35 0.83 15 24 H 0.10 1.32 8.05 -51.93 -0.42 0.90 15 25 H 0.40 3.19 9.10 45.56 0.41 3.61 15 26 H 0.38 5.37 6.91 -40.82 -0.28 5.09 15 27 H 0.39 5.69 8.84 -40.82 -0.36 5.33 15 28 H 0.10 2.26 8.06 -52.49 -0.42 1.84 15 LS Contribution 246.53 15.07 3.72 3.72 Total: -1.00 -31.48 246.53 -4.83 -36.31 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -1.69 Total: 12.80 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.91 Total: -17.05 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 1.06 Total: -35.45 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.84 Total: -17.28 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.17 Total: 16.96 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.48 -4.83 -36.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310294.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.533 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds