Wall clock time and date at job start Mon Mar 30 2020 02:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86805 * 119.99750 * 2 1 4 4 H 1.48504 * 109.46880 * 270.00337 * 3 2 1 5 5 H 1.48500 * 109.47094 * 30.00392 * 3 2 1 6 6 H 1.48497 * 109.47071 * 150.00384 * 3 2 1 7 7 C 1.38823 * 120.00450 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99629 * 359.97438 * 7 2 1 9 9 N 1.36881 * 120.00028 * 179.97438 * 7 2 1 10 10 C 1.38659 * 119.99737 * 185.01144 * 9 7 2 11 11 C 1.39790 * 119.67773 * 354.26371 * 10 9 7 12 12 C 1.36211 * 120.16396 * 179.97438 * 11 10 9 13 13 C 1.41603 * 118.90334 * 359.96785 * 12 11 10 14 14 C 1.40472 * 130.42017 * 179.97438 * 13 12 11 15 15 N 1.28813 * 118.81189 * 180.31760 * 14 13 12 16 16 S 1.69561 * 108.46343 * 359.58498 * 15 14 13 17 17 C 1.40980 * 117.38336 * 0.02971 * 13 12 11 18 18 N 1.32198 * 121.61301 * 359.97438 * 17 13 12 19 19 H 0.96995 * 120.00513 * 359.97438 * 1 2 3 20 20 H 0.96993 * 120.00273 * 5.01499 * 9 7 2 21 21 H 1.08000 * 119.91683 * 359.95828 * 11 10 9 22 22 H 1.07998 * 120.54718 * 180.02562 * 12 11 10 23 23 H 1.07992 * 120.59142 * 0.03279 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4968 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4403 0.6999 7 6 2.0097 -1.2022 -0.0005 8 1 1.4697 -2.1375 -0.0005 9 7 3.3785 -1.2021 -0.0011 10 6 4.0718 -2.3983 -0.1065 11 6 3.3714 -3.6079 -0.0907 12 6 4.0424 -4.7888 -0.1942 13 6 5.4528 -4.7659 -0.3177 14 6 6.3738 -5.8198 -0.4380 15 7 7.6278 -5.5407 -0.5320 16 16 7.8074 -3.8552 -0.4902 17 6 6.0827 -3.5047 -0.3254 18 7 5.3900 -2.3835 -0.2222 19 1 -0.4851 0.8400 0.0004 20 1 3.8635 -0.3653 0.0724 21 1 2.2955 -3.6062 0.0040 22 1 3.5074 -5.7269 -0.1831 23 1 6.0368 -6.8458 -0.4468 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260372373.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:28 Heat of formation + Delta-G solvation = 65.191517 kcal Electronic energy + Delta-G solvation = -12001.940332 eV Core-core repulsion = 9748.511910 eV Total energy + Delta-G solvation = -2253.428422 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.032 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.72257 -37.08743 -34.98978 -32.47421 -31.70580 -28.82579 -25.42173 -23.58958 -22.66038 -20.76854 -18.73124 -17.67817 -16.71970 -15.84377 -15.19341 -14.84235 -14.26262 -13.72367 -13.25400 -12.83702 -12.74051 -12.52200 -12.08875 -11.58943 -11.13507 -10.85793 -10.56644 -10.41927 -9.85300 -9.72288 -9.21104 -8.65161 -7.64069 -7.47583 -6.96830 -4.22036 1.16038 1.88627 2.00091 2.57139 2.76735 2.84547 2.88762 2.95595 3.65307 4.18951 4.26929 4.79848 5.18950 5.34323 5.56629 5.90536 6.01377 6.21182 6.47721 6.72006 6.98814 7.10551 7.23763 7.49784 8.01544 8.29293 8.70195 9.00372 10.10488 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.057086 B = 0.007418 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.371239 B = 3773.741099 C = 4251.604643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.051 3.949 3 Si 0.886 3.114 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.304 4.304 8 H 0.129 0.871 9 N -0.520 5.520 10 C 0.378 3.622 11 C -0.221 4.221 12 C 0.020 3.980 13 C -0.322 4.322 14 C 0.162 3.838 15 N -0.493 5.493 16 S 0.149 5.851 17 C 0.165 3.835 18 N -0.557 5.557 19 H 0.287 0.713 20 H 0.389 0.611 21 H 0.139 0.861 22 H 0.127 0.873 23 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.556 -4.126 -0.036 6.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.159 4.159 3 Si 0.710 3.290 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.435 4.435 8 H 0.147 0.853 9 N -0.124 5.124 10 C 0.128 3.872 11 C -0.247 4.247 12 C -0.008 4.008 13 C -0.342 4.342 14 C -0.041 4.041 15 N -0.308 5.308 16 S 0.290 5.710 17 C -0.097 4.097 18 N -0.284 5.284 19 H 0.097 0.903 20 H 0.225 0.775 21 H 0.157 0.843 22 H 0.145 0.855 23 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.614 -2.963 -0.213 7.250 hybrid contribution -1.880 0.241 0.214 1.908 sum 4.733 -2.722 0.001 5.460 Atomic orbital electron populations 1.69644 1.05836 1.29376 1.42494 1.25146 0.95752 0.99114 0.95913 0.86497 0.80087 0.82392 0.80009 1.18623 1.19211 1.18638 1.19644 0.78438 0.97412 1.47977 0.85333 1.41296 1.06454 1.05005 1.59666 1.18065 0.86922 0.86550 0.95707 1.20925 1.01346 0.91203 1.11241 1.20535 0.90737 0.97653 0.91909 1.19443 0.96179 0.92850 1.25744 1.22163 0.88544 1.00021 0.93325 1.76181 1.19685 1.05968 1.28918 1.84614 1.03538 1.03286 1.79560 1.23672 0.98648 0.91161 0.96237 1.66265 1.06196 1.27955 1.27944 0.90256 0.77519 0.84324 0.85532 0.81522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.70 13.96 55.49 0.77 -19.93 14 2 C 0.05 1.19 5.50 -17.46 -0.10 1.10 14 3 Si 0.89 17.49 27.78 -169.99 -4.72 12.77 14 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 14 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 14 6 H -0.26 -5.00 6.45 56.52 0.36 -4.64 14 7 C -0.30 -7.10 10.02 -15.08 -0.15 -7.25 14 8 H 0.13 3.08 5.88 -52.49 -0.31 2.77 14 9 N -0.52 -11.47 5.23 -11.10 -0.06 -11.52 14 10 C 0.38 8.23 7.61 -155.17 -1.18 7.05 14 11 C -0.22 -4.31 9.22 -39.73 -0.37 -4.67 14 12 C 0.02 0.34 10.16 -39.03 -0.40 -0.06 14 13 C -0.32 -5.94 5.96 -106.73 -0.64 -6.58 14 14 C 0.16 2.65 11.21 -17.98 -0.20 2.45 14 15 N -0.49 -8.86 11.95 29.74 0.36 -8.51 14 16 S 0.15 2.75 23.91 -107.50 -2.57 0.18 14 17 C 0.16 3.40 7.88 -16.36 -0.13 3.27 14 18 N -0.56 -12.32 10.42 -10.64 -0.11 -12.43 14 19 H 0.29 6.51 8.31 -40.82 -0.34 6.17 14 20 H 0.39 8.26 5.86 -40.82 -0.24 8.02 14 21 H 0.14 2.61 5.93 -52.49 -0.31 2.30 14 22 H 0.13 1.65 8.06 -52.49 -0.42 1.23 14 23 H 0.17 2.05 8.06 -52.49 -0.42 1.62 14 LS Contribution 223.58 15.07 3.37 3.37 Total: -1.00 -25.85 223.58 -7.00 -32.85 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -0.88 Total: 7.90 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -3.16 Total: -4.69 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.96 Total: -52.39 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -4.72 Total: 12.77 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.57 Total: 0.18 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -25.85 -7.00 -32.85 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372373.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.041 kcal (2) G-P(sol) polarization free energy of solvation -25.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds