Wall clock time and date at job start Mon Mar 30 2020 02:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31396 * 1 3 3 Si 1.86808 * 119.99560 * 2 1 4 4 H 1.48497 * 109.47122 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46591 * 120.00359 * 3 2 1 6 6 H 1.48492 * 109.47131 * 239.99784 * 3 2 1 7 7 C 1.38995 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00123 * 203.25918 * 7 2 1 9 9 N 1.36932 * 119.99765 * 23.26188 * 7 2 1 10 10 N 1.39919 * 125.27627 * 19.76626 * 9 7 2 11 11 H 0.96993 * 125.28377 * 359.97438 * 10 9 7 12 12 C 1.37953 * 109.44005 * 179.97438 * 10 9 7 13 13 C 1.38655 * 134.22634 * 180.02562 * 12 10 9 14 14 C 1.38772 * 118.86432 * 179.97438 * 13 12 10 15 15 O 1.35532 * 119.37873 * 180.02562 * 14 13 12 16 16 N 1.32664 * 121.24640 * 0.02562 * 14 13 12 17 17 C 1.31839 * 122.09940 * 359.97438 * 16 14 13 18 18 C 1.39062 * 120.27951 * 359.97438 * 17 16 14 19 19 C 1.34903 * 125.27313 * 199.46359 * 9 7 2 20 20 O 1.21651 * 126.39633 * 359.97438 * 19 9 7 21 21 H 0.97004 * 119.99779 * 185.91227 * 1 2 3 22 22 H 1.07997 * 120.56692 * 359.95605 * 13 12 10 23 23 H 0.96701 * 114.00505 * 89.99916 * 15 14 13 24 24 H 1.08000 * 119.85949 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6179 0.0000 4 1 1.2828 2.7465 0.0006 5 1 3.1017 1.6964 1.2126 6 1 3.1016 1.6966 -1.2124 7 6 2.0090 -1.2037 -0.0005 8 1 3.0232 -1.2418 0.3688 9 7 1.4079 -2.3412 -0.4694 10 7 0.2921 -2.3766 -1.3129 11 1 -0.1757 -1.5993 -1.6560 12 6 -0.0394 -3.6886 -1.5810 13 6 -1.0274 -4.3015 -2.3364 14 6 -1.0690 -5.6877 -2.3869 15 8 -2.0301 -6.2976 -3.1225 16 7 -0.1858 -6.4271 -1.7287 17 6 0.7712 -5.8903 -0.9979 18 6 0.8835 -4.5080 -0.8952 19 6 1.8031 -3.6013 -0.1942 20 8 2.7444 -3.9262 0.5046 21 1 -0.4850 -0.8356 0.0865 22 1 -1.7524 -3.7102 -2.8760 23 1 -1.7761 -6.4650 -4.0404 24 1 1.4714 -6.5268 -0.4773 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260379919.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:09 Heat of formation + Delta-G solvation = -3.265877 kcal Electronic energy + Delta-G solvation = -14491.837847 eV Core-core repulsion = 11792.688019 eV Total energy + Delta-G solvation = -2699.149828 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.73635 -40.40479 -38.07017 -37.70053 -35.56247 -33.19534 -31.33058 -30.81303 -27.47988 -24.98928 -23.93515 -21.97643 -21.15174 -20.07253 -18.42492 -17.93968 -17.44305 -16.94674 -16.58780 -16.09538 -15.91382 -15.57084 -15.16581 -14.26868 -14.07562 -13.61529 -13.43682 -12.87464 -12.79834 -12.31424 -11.95729 -11.54806 -10.95174 -10.70990 -10.50312 -10.07083 -9.42002 -8.95725 -6.47952 -0.34890 0.28642 0.79708 1.43685 1.52189 1.80412 1.84761 2.26607 2.52249 2.66819 2.82067 3.09378 3.46705 3.65922 3.92826 4.20356 4.50527 4.72437 4.80622 5.22296 5.29273 5.52729 5.80298 6.07293 6.62907 6.66496 6.84285 6.91427 7.53273 8.04179 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.047963 B = 0.008610 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.641182 B = 3251.258322 C = 3749.692056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C -0.012 4.012 3 Si 1.135 2.865 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.432 4.432 8 H 0.107 0.893 9 N -0.243 5.243 10 N -0.489 5.489 11 H 0.446 0.554 12 C 0.216 3.784 13 C -0.220 4.220 14 C 0.354 3.646 15 O -0.478 6.478 16 N -0.548 5.548 17 C 0.232 3.768 18 C -0.304 4.304 19 C 0.470 3.530 20 O -0.612 6.612 21 H 0.269 0.731 22 H 0.171 0.829 23 H 0.425 0.575 24 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.660 -3.236 -8.249 9.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.217 4.217 3 Si 0.951 3.049 4 H -0.193 1.193 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.558 4.558 8 H 0.125 0.875 9 N -0.048 5.048 10 N -0.212 5.212 11 H 0.294 0.706 12 C 0.094 3.906 13 C -0.247 4.247 14 C 0.178 3.822 15 O -0.289 6.289 16 N -0.270 5.270 17 C 0.070 3.930 18 C -0.316 4.316 19 C 0.263 3.737 20 O -0.498 6.498 21 H 0.081 0.919 22 H 0.188 0.812 23 H 0.287 0.713 24 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.745 -2.325 -7.491 8.691 hybrid contribution 0.196 -0.435 -0.160 0.503 sum -3.549 -2.760 -7.651 8.874 Atomic orbital electron populations 1.70930 1.07475 1.31164 1.41009 1.28323 0.96125 1.05629 0.91594 0.82684 0.74180 0.69124 0.78874 1.19301 1.19028 1.18704 1.20956 1.00856 0.86469 1.47484 0.87526 1.43729 1.18724 1.07489 1.34869 1.43996 1.25443 1.06336 1.45461 0.70563 1.18375 0.94709 0.83108 0.94379 1.20868 1.01790 0.94551 1.07497 1.18786 0.86197 0.86108 0.91074 1.84673 1.35396 1.80360 1.28427 1.67458 1.05791 1.40703 1.13039 1.22054 0.91945 0.89172 0.89814 1.21167 1.03376 0.96823 1.10227 1.17773 0.87935 0.81593 0.86366 1.90621 1.33970 1.78779 1.46451 0.91921 0.81170 0.71275 0.80233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.24 12.63 21.67 0.27 -43.97 14 2 C -0.01 -0.58 5.28 84.94 0.45 -0.13 14 3 Si 1.14 42.08 29.98 68.60 2.06 44.14 14 4 H -0.27 -9.69 7.11 99.48 0.71 -8.99 14 5 H -0.27 -9.41 7.11 99.48 0.71 -8.71 14 6 H -0.26 -9.06 7.11 99.48 0.71 -8.35 14 7 C -0.43 -23.36 9.84 84.08 0.83 -22.53 14 8 H 0.11 5.97 7.93 -2.91 -0.02 5.95 14 9 N -0.24 -12.77 3.45 -310.25 -1.07 -13.84 14 10 N -0.49 -21.42 5.77 -51.14 -0.29 -21.71 14 11 H 0.45 18.36 7.27 -213.44 -1.55 16.81 14 12 C 0.22 8.40 7.36 39.01 0.29 8.69 14 13 C -0.22 -6.62 10.05 22.50 0.23 -6.40 14 14 C 0.35 10.38 7.73 84.70 0.65 11.04 14 15 O -0.48 -10.61 13.54 -88.37 -1.20 -11.81 14 16 N -0.55 -18.20 10.37 -308.04 -3.19 -21.40 14 17 C 0.23 8.43 11.25 84.89 0.96 9.39 14 18 C -0.30 -13.16 6.39 -20.07 -0.13 -13.29 14 19 C 0.47 25.07 8.10 86.50 0.70 25.77 14 20 O -0.61 -36.16 17.84 -4.19 -0.07 -36.24 14 21 H 0.27 13.93 6.64 -92.71 -0.62 13.31 14 22 H 0.17 3.96 8.06 -2.91 -0.02 3.93 14 23 H 0.42 4.53 9.06 -74.06 -0.67 3.86 14 24 H 0.18 5.79 8.06 -2.91 -0.02 5.76 14 Total: -1.00 -68.39 227.92 -0.32 -68.71 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.79 Total: 23.58 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 3.97 Total: 12.53 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -4.28 Total: -100.92 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -1.27 Total: -48.05 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.06 Total: 44.14 kcal Total: -68.39 -0.32 -68.71 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379919.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.444 kcal (2) G-P(sol) polarization free energy of solvation -68.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds