Wall clock time and date at job start Mon Mar 30 2020 02:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30924 * 1 3 3 Si 1.86796 * 120.00207 * 2 1 4 4 H 1.48492 * 109.47571 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47125 * 300.00371 * 3 2 1 6 6 H 1.48504 * 109.47015 * 60.00013 * 3 2 1 7 7 C 1.39859 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99861 * 163.00336 * 7 2 1 9 9 C 1.41240 * 120.00127 * 342.99313 * 7 2 1 10 10 C 1.39546 * 121.02600 * 335.67755 * 9 7 2 11 11 N 1.35030 * 118.84911 * 179.97438 * 10 9 7 12 12 N 1.40325 * 132.23457 * 179.97438 * 11 10 9 13 13 C 1.31582 * 107.00914 * 179.97438 * 12 11 10 14 14 N 1.39139 * 125.28354 * 179.97438 * 13 12 11 15 15 N 1.33250 * 109.43435 * 0.02562 * 13 12 11 16 16 C 1.32983 * 109.74068 * 359.97438 * 15 13 12 17 17 N 1.34072 * 131.22904 * 180.02562 * 16 15 13 18 18 C 1.31560 * 121.35022 * 179.97438 * 17 16 15 19 19 O 1.35283 * 120.43769 * 179.97438 * 18 17 16 20 20 H 0.96998 * 120.00178 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.56752 * 0.25924 * 10 9 7 22 22 H 0.97000 * 119.99761 * 179.97438 * 14 13 12 23 23 H 0.96995 * 120.00515 * 359.97438 * 14 13 12 24 24 H 0.96699 * 114.00242 * 85.07738 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.7032 1.3464 0.0006 5 1 1.8845 2.3964 -1.2124 6 1 1.8845 2.3964 1.2125 7 6 2.0085 -1.2112 -0.0005 8 1 3.0532 -1.2315 -0.2740 9 6 1.3486 -2.4078 0.3567 10 6 0.2143 -2.3887 1.1692 11 7 -0.3822 -3.5588 1.4830 12 7 -1.5100 -3.8639 2.2603 13 6 -1.6523 -5.1718 2.2352 14 7 -2.6559 -5.8836 2.8848 15 7 -0.6854 -5.7088 1.4921 16 6 0.1042 -4.7485 1.0201 17 7 1.1912 -4.8034 0.2371 18 6 1.8346 -3.7123 -0.1183 19 8 2.9298 -3.7892 -0.9087 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1823 -1.4538 1.5368 22 1 -2.6885 -6.8505 2.8138 23 1 -3.3230 -5.4131 3.4087 24 1 2.7309 -3.8186 -1.8546 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260393151.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:30 Heat of formation + Delta-G solvation = 66.319187 kcal Electronic energy + Delta-G solvation = -14428.659692 eV Core-core repulsion = 11764.820050 eV Total energy + Delta-G solvation = -2663.839642 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.065 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.13847 -39.95139 -37.58985 -36.22919 -34.97182 -34.00184 -31.57224 -30.54647 -27.24197 -24.74869 -24.07120 -22.24663 -20.28478 -19.78194 -18.73755 -18.21711 -17.38423 -17.03508 -16.57903 -16.35905 -15.84880 -15.01796 -14.67278 -13.92093 -13.59656 -13.24522 -13.02822 -12.77425 -12.55477 -12.51616 -11.95640 -11.45563 -10.84897 -10.73212 -10.62056 -9.52238 -9.30259 -8.88769 -6.52931 -0.11798 0.31960 1.39081 1.47539 1.50977 1.63889 1.99006 2.10105 2.18510 2.51023 2.73338 3.10622 3.55131 3.81126 4.34717 4.90269 5.01874 5.16059 5.31744 5.44505 5.67496 6.05759 6.36489 6.46196 6.50962 6.63290 6.79039 6.89845 7.57909 8.07184 Molecular weight = 221.07amu Principal moments of inertia in cm(-1) A = 0.038145 B = 0.009367 C = 0.007676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.865925 B = 2988.461300 C = 3646.960035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.033 3.967 3 Si 0.998 3.002 4 H -0.247 1.247 5 H -0.264 1.264 6 H -0.269 1.269 7 C -0.419 4.419 8 H 0.117 0.883 9 C 0.007 3.993 10 C -0.015 4.015 11 N -0.257 5.257 12 N -0.437 5.437 13 C 0.477 3.523 14 N -0.800 5.800 15 N -0.608 5.608 16 C 0.370 3.630 17 N -0.504 5.504 18 C 0.351 3.649 19 O -0.459 6.459 20 H 0.301 0.699 21 H 0.166 0.834 22 H 0.423 0.577 23 H 0.423 0.577 24 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 1.582 -0.444 1.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.170 1.170 5 H -0.188 1.188 6 H -0.193 1.193 7 C -0.448 4.448 8 H 0.134 0.866 9 C -0.004 4.004 10 C -0.156 4.156 11 N -0.031 5.031 12 N -0.286 5.286 13 C 0.107 3.893 14 N -0.359 5.359 15 N -0.355 5.355 16 C 0.014 3.986 17 N -0.231 5.231 18 C 0.144 3.856 19 O -0.268 6.268 20 H 0.112 0.888 21 H 0.183 0.817 22 H 0.255 0.745 23 H 0.255 0.745 24 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 0.423 0.886 0.118 0.989 hybrid contribution -0.548 1.074 -0.185 1.220 sum -0.125 1.961 -0.067 1.966 Atomic orbital electron populations 1.69792 1.09453 1.32263 1.31533 1.27013 0.95502 1.05285 0.90806 0.84874 0.79718 0.74708 0.78954 1.16974 1.18820 1.19340 1.19770 0.98950 0.89341 1.36725 0.86556 1.19376 0.92659 0.93417 0.94910 1.22144 1.00732 0.87218 1.05526 1.47600 1.17830 1.08325 1.29352 1.78334 1.08053 1.13584 1.28630 1.20526 0.90164 0.87228 0.91415 1.40629 1.28905 1.09064 1.57339 1.70286 1.10821 1.28567 1.25806 1.21423 0.95007 0.82083 1.00087 1.66756 1.06551 1.33122 1.16706 1.21148 0.86114 0.86692 0.91614 1.84537 1.24642 1.95130 1.22467 0.88755 0.81718 0.74472 0.74480 0.71676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -36.15 10.96 21.82 0.24 -35.91 14 2 C 0.03 1.35 5.18 85.22 0.44 1.79 14 3 Si 1.00 31.19 29.59 68.60 2.03 33.22 14 4 H -0.25 -7.38 7.11 99.48 0.71 -6.67 14 5 H -0.26 -7.94 7.11 99.48 0.71 -7.24 14 6 H -0.27 -8.40 7.11 99.48 0.71 -7.70 14 7 C -0.42 -18.37 8.85 23.40 0.21 -18.16 14 8 H 0.12 4.69 7.79 -2.91 -0.02 4.67 14 9 C 0.01 0.32 5.73 -19.90 -0.11 0.20 14 10 C -0.02 -0.78 10.03 84.52 0.85 0.06 14 11 N -0.26 -13.66 3.83 -195.24 -0.75 -14.40 14 12 N -0.44 -21.89 12.79 -59.37 -0.76 -22.65 14 13 C 0.48 21.61 9.38 261.17 2.45 24.06 14 14 N -0.80 -24.75 9.11 -59.34 -0.54 -25.29 14 15 N -0.61 -30.84 11.28 -200.76 -2.27 -33.10 14 16 C 0.37 19.71 8.95 261.44 2.34 22.05 14 17 N -0.50 -25.36 10.47 -305.78 -3.20 -28.56 14 18 C 0.35 16.02 8.02 87.06 0.70 16.72 14 19 O -0.46 -16.71 13.11 -85.68 -1.12 -17.83 14 20 H 0.30 12.10 8.30 -92.71 -0.77 11.33 14 21 H 0.17 8.65 6.19 -2.91 -0.02 8.63 14 22 H 0.42 10.73 8.96 -92.71 -0.83 9.90 14 23 H 0.42 10.55 8.95 -92.71 -0.83 9.72 14 24 H 0.42 10.64 9.06 -74.06 -0.67 9.97 14 Total: -1.00 -64.68 227.84 -0.52 -65.20 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -1.02 Total: 32.60 kcal Atomic # 6 Polarization: 39.86 SS G_CDS: 6.87 Total: 46.73 kcal Atomic # 7 Polarization: -152.64 SS G_CDS: -7.27 Total: -159.91 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -1.12 Total: -17.83 kcal Atomic # 14 Polarization: 31.19 SS G_CDS: 2.03 Total: 33.22 kcal Total: -64.68 -0.52 -65.20 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393151.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.518 kcal (2) G-P(sol) polarization free energy of solvation -64.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds