Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28608 * 124.95969 * 2 1 4 4 C 1.31086 * 111.16236 * 179.97438 * 3 2 1 5 5 C 1.39912 * 107.47984 * 0.02562 * 4 3 2 6 6 C 1.35129 * 124.96230 * 180.02562 * 2 1 3 7 7 C 1.47140 * 147.95870 * 359.97438 * 6 2 1 8 8 O 1.21477 * 125.62473 * 0.05616 * 7 6 2 9 9 N 1.34560 * 108.75131 * 180.02562 * 7 6 2 10 10 C 1.37432 * 124.67567 * 179.73794 * 9 7 6 11 11 H 1.07998 * 119.99868 * 326.94595 * 10 9 7 12 12 C 1.38858 * 119.99709 * 146.94680 * 10 9 7 13 13 N 1.31436 * 120.00554 * 340.12981 * 12 10 9 14 14 Si 1.86807 * 119.99808 * 160.13311 * 12 10 9 15 15 H 1.48501 * 109.47129 * 59.99426 * 14 12 10 16 16 H 1.48496 * 109.46922 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46633 * 299.99811 * 14 12 10 18 18 C 1.34607 * 110.64320 * 359.97438 * 9 7 6 19 19 O 1.21439 * 125.72286 * 179.97438 * 18 9 7 20 20 H 1.09000 * 109.47138 * 269.98327 * 1 2 3 21 21 H 1.09004 * 109.47173 * 29.98136 * 1 2 3 22 22 H 1.09002 * 109.47020 * 149.97653 * 1 2 3 23 23 H 1.07999 * 126.26265 * 180.02562 * 4 3 2 24 24 H 0.96999 * 120.00298 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2020 1.0540 0.0000 4 6 3.4750 0.7414 0.0005 5 6 3.5649 -0.6548 0.0003 6 6 2.2394 -1.1074 -0.0005 7 6 2.3144 -2.5769 -0.0008 8 8 1.3643 -3.3339 -0.0016 9 7 3.6089 -2.9440 -0.0008 10 6 4.0529 -4.2446 0.0041 11 1 3.4860 -5.0067 0.5182 12 6 5.2303 -4.5788 -0.6517 13 7 5.7122 -3.7855 -1.5823 14 14 6.1293 -6.1561 -0.2116 15 1 5.2388 -7.3186 -0.4581 16 1 7.3489 -6.2809 -1.0495 17 1 6.5143 -6.1226 1.2222 18 6 4.4091 -1.8616 -0.0010 19 8 5.6234 -1.8775 -0.0007 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3634 0.8902 -0.5136 22 1 -0.3633 -0.8898 -0.5142 23 1 4.3030 1.4347 0.0011 24 1 6.5345 -4.0191 -2.0407 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260456637.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = 36.284620 kcal Electronic energy + Delta-G solvation = -14783.959313 eV Core-core repulsion = 12086.524523 eV Total energy + Delta-G solvation = -2697.434790 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.24927 -41.67741 -39.16347 -36.57622 -35.09800 -34.18625 -32.05890 -28.16609 -27.62842 -25.60491 -23.77525 -22.40519 -20.67324 -19.38585 -18.31121 -17.98391 -17.82367 -16.90331 -16.25715 -15.87164 -15.76467 -15.31521 -14.65020 -14.49935 -13.78199 -13.65263 -13.57626 -13.07585 -12.85089 -12.37682 -12.19755 -11.57129 -11.27166 -11.09423 -10.48135 -10.26795 -10.12269 -8.56125 -6.42720 -0.60869 1.00157 1.04614 1.38997 1.45963 1.54903 1.77947 2.02688 2.42508 2.47845 2.64359 3.07363 3.44791 3.78890 3.96886 4.30340 4.40447 4.52025 4.59922 5.08133 5.22607 5.51556 5.69872 5.79416 6.49713 6.60712 6.77233 6.99872 7.55500 8.54048 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.048549 B = 0.010117 C = 0.008676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.597922 B = 2766.967072 C = 3226.449372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.211 5.211 3 N -0.275 5.275 4 C 0.088 3.912 5 C -0.269 4.269 6 C -0.055 4.055 7 C 0.571 3.429 8 O -0.525 6.525 9 N -0.414 5.414 10 C -0.397 4.397 11 H 0.105 0.895 12 C 0.015 3.985 13 N -0.860 5.860 14 Si 1.005 2.995 15 H -0.255 1.255 16 H -0.273 1.273 17 H -0.264 1.264 18 C 0.569 3.431 19 O -0.481 6.481 20 H 0.113 0.887 21 H 0.132 0.868 22 H 0.102 0.898 23 H 0.230 0.770 24 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.916 7.337 2.541 10.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N 0.004 4.996 3 N -0.108 5.108 4 C -0.085 4.085 5 C -0.284 4.284 6 C -0.192 4.192 7 C 0.360 3.640 8 O -0.403 6.403 9 N -0.141 5.141 10 C -0.521 4.521 11 H 0.123 0.877 12 C -0.194 4.194 13 N -0.492 5.492 14 Si 0.825 3.175 15 H -0.179 1.179 16 H -0.198 1.198 17 H -0.189 1.189 18 C 0.359 3.641 19 O -0.354 6.354 20 H 0.132 0.868 21 H 0.151 0.849 22 H 0.120 0.880 23 H 0.247 0.753 24 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.478 7.843 2.381 11.095 hybrid contribution 0.980 -1.361 -0.098 1.680 sum -6.498 6.482 2.283 9.458 Atomic orbital electron populations 1.22844 0.69551 1.07493 1.07027 1.45296 1.09315 0.99365 1.45620 1.73593 1.03292 1.11203 1.22669 1.23495 0.94135 0.91080 0.99839 1.22042 0.93957 0.96193 1.16232 1.22456 0.93058 0.92722 1.10964 1.17568 0.83962 0.84698 0.77742 1.90599 1.40067 1.59911 1.49743 1.42175 1.04600 1.07959 1.59411 1.19679 1.10943 0.83246 1.38249 0.87702 1.26474 0.97560 1.02946 0.92376 1.70027 1.20691 1.39638 1.18815 0.84856 0.77449 0.76295 0.78861 1.17893 1.19787 1.18884 1.17844 0.86374 0.83202 0.76706 1.90555 1.13699 1.86882 1.44239 0.86836 0.84928 0.87976 0.75331 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 11.32 127.77 1.45 2.77 14 2 N -0.21 -6.62 3.71 -355.73 -1.32 -7.94 14 3 N -0.28 -8.38 11.89 -56.86 -0.68 -9.06 14 4 C 0.09 2.88 12.08 85.21 1.03 3.91 14 5 C -0.27 -11.58 7.38 -20.05 -0.15 -11.73 14 6 C -0.06 -2.28 7.93 41.42 0.33 -1.95 14 7 C 0.57 28.46 7.93 86.61 0.69 29.14 14 8 O -0.53 -27.02 17.76 -3.64 -0.06 -27.09 14 9 N -0.41 -22.89 2.71 -590.46 -1.60 -24.49 14 10 C -0.40 -22.78 9.59 83.96 0.80 -21.97 14 11 H 0.11 5.84 7.91 -2.91 -0.02 5.82 14 12 C 0.02 0.84 4.80 84.90 0.41 1.25 14 13 N -0.86 -50.51 11.22 21.65 0.24 -50.26 14 14 Si 1.01 42.96 29.60 68.60 2.03 44.99 14 15 H -0.25 -10.18 7.11 99.48 0.71 -9.47 14 16 H -0.27 -11.21 7.11 99.48 0.71 -10.51 14 17 H -0.26 -11.02 7.11 99.48 0.71 -10.31 14 18 C 0.57 30.56 7.31 86.65 0.63 31.19 14 19 O -0.48 -28.22 15.33 -3.52 -0.05 -28.27 14 20 H 0.11 1.69 8.14 -2.39 -0.02 1.67 14 21 H 0.13 1.69 8.14 -2.38 -0.02 1.67 14 22 H 0.10 2.02 8.13 -2.39 -0.02 2.00 14 23 H 0.23 5.54 8.06 -2.91 -0.02 5.52 14 24 H 0.28 15.31 8.31 -92.71 -0.77 14.54 14 Total: -1.00 -73.59 230.56 4.99 -68.59 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: 1.25 Total: 0.93 kcal Atomic # 6 Polarization: 27.42 SS G_CDS: 5.19 Total: 32.61 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -3.35 Total: -91.76 kcal Atomic # 8 Polarization: -55.24 SS G_CDS: -0.12 Total: -55.36 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -73.59 4.99 -68.59 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260456637.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.878 kcal (2) G-P(sol) polarization free energy of solvation -73.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds