Wall clock time and date at job start Mon Mar 30 2020 02:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86794 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47383 * 269.99851 * 3 2 1 5 5 H 1.48504 * 109.47153 * 30.00022 * 3 2 1 6 6 H 1.48508 * 109.47029 * 149.99638 * 3 2 1 7 7 C 1.38797 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99930 * 0.02562 * 7 2 1 9 9 N 1.36906 * 120.00153 * 180.02562 * 7 2 1 10 10 C 1.38873 * 120.00096 * 185.01957 * 9 7 2 11 11 C 1.39586 * 119.34764 * 354.25699 * 10 9 7 12 12 C 1.37911 * 119.02606 * 180.02562 * 11 10 9 13 13 C 1.39593 * 118.56496 * 359.92513 * 12 11 10 14 14 S 1.76019 * 131.82434 * 180.02562 * 13 12 11 15 15 C 1.70661 * 90.76780 * 179.97438 * 14 13 12 16 16 N 1.28099 * 111.47890 * 359.97438 * 15 14 13 17 17 C 1.34474 * 117.90924 * 0.02562 * 16 15 14 18 18 N 1.31702 * 119.34103 * 174.18397 * 10 9 7 19 19 H 0.96994 * 119.99866 * 0.02562 * 1 2 3 20 20 H 0.96998 * 119.99469 * 5.01465 * 9 7 2 21 21 H 1.08005 * 120.48541 * 359.97438 * 11 10 9 22 22 H 1.07991 * 120.71850 * 180.19939 * 12 11 10 23 23 H 1.08006 * 124.26296 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4401 0.7002 7 6 2.0098 -1.2020 0.0005 8 1 1.4698 -2.1373 0.0005 9 7 3.3789 -1.2021 0.0011 10 6 4.0733 -2.4002 -0.1036 11 6 3.3669 -3.6040 -0.0871 12 6 4.0631 -4.7899 -0.1910 13 6 5.4530 -4.7396 -0.3107 14 16 6.6647 -6.0072 -0.4631 15 6 7.9092 -4.8414 -0.5299 16 7 7.4422 -3.6515 -0.4461 17 6 6.1111 -3.5048 -0.3239 18 7 5.3851 -2.3779 -0.2179 19 1 -0.4850 0.8400 -0.0004 20 1 3.8638 -0.3652 0.0745 21 1 2.2909 -3.6067 0.0064 22 1 3.5440 -5.7368 -0.1844 23 1 8.9584 -5.0770 -0.6309 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260486202.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:30 Heat of formation + Delta-G solvation = 64.844540 kcal Electronic energy + Delta-G solvation = -12032.976178 eV Core-core repulsion = 9779.532710 eV Total energy + Delta-G solvation = -2253.443468 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.51629 -39.05080 -36.49536 -34.05507 -33.10645 -30.02356 -26.84638 -25.95127 -24.08385 -22.40296 -20.36993 -19.31246 -18.33488 -17.37261 -17.05260 -16.23763 -16.12581 -15.59345 -14.88731 -14.37025 -14.24780 -14.10922 -13.65804 -13.07027 -12.93071 -12.37824 -12.01396 -11.93892 -11.45571 -10.83327 -10.63910 -10.02837 -9.50457 -8.88035 -8.53908 -5.93365 -0.44805 0.36817 0.49846 0.88405 1.26568 1.29133 1.34298 1.49041 2.11859 2.37864 2.73391 3.18452 3.21776 3.77704 4.14719 4.29722 4.34784 4.76935 4.99740 5.05465 5.41778 5.54549 5.80401 6.46348 6.49492 6.93780 7.16956 7.55545 8.59152 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.063998 B = 0.007196 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.409524 B = 3890.094123 C = 4314.935379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.002 3.998 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.313 4.313 8 H 0.105 0.895 9 N -0.572 5.572 10 C 0.392 3.608 11 C -0.222 4.222 12 C 0.017 3.983 13 C -0.344 4.344 14 S 0.157 5.843 15 C 0.100 3.900 16 N -0.518 5.518 17 C 0.313 3.687 18 N -0.592 5.592 19 H 0.282 0.718 20 H 0.384 0.616 21 H 0.144 0.856 22 H 0.169 0.831 23 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.046 -10.964 -0.667 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.200 4.200 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.442 4.442 8 H 0.123 0.877 9 N -0.187 5.187 10 C 0.143 3.857 11 C -0.249 4.249 12 C -0.011 4.011 13 C -0.469 4.469 14 S 0.404 5.596 15 C -0.206 4.206 16 N -0.236 5.236 17 C 0.068 3.932 18 N -0.320 5.320 19 H 0.092 0.908 20 H 0.220 0.780 21 H 0.162 0.838 22 H 0.187 0.813 23 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 11.367 -10.556 -0.719 15.529 hybrid contribution -0.753 1.584 0.132 1.759 sum 10.614 -8.972 -0.587 13.910 Atomic orbital electron populations 1.69753 1.06864 1.29324 1.48868 1.25624 0.96249 1.01474 0.96682 0.85651 0.78983 0.79368 0.79510 1.19008 1.19034 1.18390 1.19324 0.79181 0.96577 1.49148 0.87696 1.40999 1.05352 1.04569 1.67740 1.18101 0.86712 0.87535 0.93347 1.21595 1.01537 0.91173 1.10614 1.20711 0.89938 0.98804 0.91618 1.24385 1.01001 0.98069 1.23453 1.83113 0.95777 1.07711 1.72960 1.29029 1.06889 0.88971 0.95663 1.65831 1.11321 1.26093 1.20320 1.19336 0.88592 0.87995 0.97284 1.66226 1.06412 1.30532 1.28829 0.90767 0.78039 0.83844 0.81331 0.73172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.28 13.97 21.65 0.30 -49.98 14 2 C 0.00 0.10 5.50 84.86 0.47 0.57 14 3 Si 0.94 40.56 27.78 68.60 1.91 42.47 14 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 14 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 14 6 H -0.26 -10.79 6.45 99.48 0.64 -10.15 14 7 C -0.31 -16.44 10.02 84.03 0.84 -15.59 14 8 H 0.11 5.70 5.87 -2.91 -0.02 5.68 14 9 N -0.57 -28.19 5.23 -189.44 -0.99 -29.18 14 10 C 0.39 18.51 7.59 133.42 1.01 19.53 14 11 C -0.22 -9.12 9.32 22.52 0.21 -8.91 14 12 C 0.02 0.59 10.18 22.52 0.23 0.81 14 13 C -0.34 -11.92 6.57 23.00 0.15 -11.77 14 14 S 0.16 3.54 23.17 -56.49 -1.31 2.23 14 15 C 0.10 2.33 12.11 130.79 1.58 3.91 14 16 N -0.52 -18.60 10.56 -199.75 -2.11 -20.71 14 17 C 0.31 13.08 8.13 134.10 1.09 14.17 14 18 N -0.59 -28.30 10.44 -192.10 -2.01 -30.30 14 19 H 0.28 14.49 8.31 -92.71 -0.77 13.72 14 20 H 0.38 18.46 5.86 -92.71 -0.54 17.91 14 21 H 0.14 5.87 5.94 -2.91 -0.02 5.85 14 22 H 0.17 4.20 8.06 -2.92 -0.02 4.18 14 23 H 0.25 2.88 8.06 -2.91 -0.02 2.85 14 Total: -1.00 -65.59 223.32 2.04 -63.55 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.66 Total: 19.20 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 5.58 Total: 2.72 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -4.80 Total: -130.17 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.91 Total: 42.47 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.31 Total: 2.23 kcal Total: -65.59 2.04 -63.55 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260486202.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.391 kcal (2) G-P(sol) polarization free energy of solvation -65.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds