Wall clock time and date at job start Mon Mar 30 2020 02:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86805 * 120.00177 * 2 1 4 4 H 1.48498 * 109.47200 * 239.99958 * 3 2 1 5 5 H 1.48498 * 109.46669 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.99973 * 3 2 1 7 7 C 1.38825 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00307 * 180.02562 * 7 2 1 9 9 N 1.36828 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.38905 * 120.00424 * 180.02562 * 9 7 2 11 11 C 1.39271 * 120.86651 * 359.44377 * 10 9 7 12 12 C 1.38279 * 118.95273 * 179.77380 * 11 10 9 13 13 N 1.31213 * 121.63411 * 0.49629 * 12 11 10 14 14 C 1.34562 * 122.33615 * 359.76150 * 13 12 11 15 15 N 1.34477 * 129.31419 * 180.02562 * 14 13 12 16 16 C 1.28110 * 117.90851 * 179.97438 * 15 14 13 17 17 S 1.70682 * 111.43112 * 359.97438 * 16 15 14 18 18 C 1.39723 * 118.94738 * 359.97438 * 14 13 12 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 0.97005 * 119.99841 * 359.72600 * 9 7 2 21 21 H 1.07992 * 120.52250 * 359.97438 * 11 10 9 22 22 H 1.07998 * 119.17963 * 180.23501 * 12 11 10 23 23 H 1.07999 * 124.28187 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0097 -1.2022 -0.0005 8 1 3.0898 -1.2023 -0.0001 9 7 1.3256 -2.3872 -0.0005 10 6 2.0201 -3.5902 -0.0005 11 6 3.4126 -3.6114 -0.0121 12 6 4.0636 -4.8313 -0.0069 13 7 3.4020 -5.9644 -0.0010 14 6 2.0572 -6.0127 0.0051 15 7 1.2431 -7.0830 0.0119 16 6 -0.0210 -6.8748 0.0174 17 16 -0.3782 -5.2058 0.0151 18 6 1.3376 -4.8150 0.0056 19 1 -0.4850 0.8401 0.0004 20 1 0.3556 -2.3872 0.0039 21 1 3.9751 -2.6896 -0.0218 22 1 5.1434 -4.8520 -0.0120 23 1 -0.7662 -7.6565 0.0227 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260536521.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:04 Heat of formation + Delta-G solvation = 50.286789 kcal Electronic energy + Delta-G solvation = -12148.277926 eV Core-core repulsion = 9894.203186 eV Total energy + Delta-G solvation = -2254.074739 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.032 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.39553 -38.77514 -37.08142 -34.26612 -30.98313 -30.80386 -27.02934 -25.99601 -24.02896 -22.52845 -20.06470 -19.45443 -17.68230 -17.47179 -16.97456 -16.28154 -16.05287 -15.52129 -15.24553 -14.52690 -13.93716 -13.61960 -13.25023 -13.06094 -13.02826 -12.53942 -12.18585 -12.12715 -11.18467 -10.78157 -10.28705 -10.00005 -9.66248 -8.72979 -8.66131 -5.94637 -0.40995 0.43241 0.51782 0.87581 1.38882 1.41911 1.52938 1.61684 2.18578 2.86400 2.86480 3.06538 3.23835 4.01667 4.06369 4.28451 4.55452 4.87682 5.02335 5.23484 5.27776 5.63967 5.89294 6.53679 6.60484 7.14674 7.31643 7.40065 8.50062 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.041540 B = 0.008962 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.881468 B = 3123.538013 C = 3787.568254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.017 4.017 3 Si 1.006 2.994 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.331 4.331 8 H 0.118 0.882 9 N -0.541 5.541 10 C 0.247 3.753 11 C -0.300 4.300 12 C 0.181 3.819 13 N -0.569 5.569 14 C 0.298 3.702 15 N -0.500 5.500 16 C 0.098 3.902 17 S 0.107 5.893 18 C -0.345 4.345 19 H 0.283 0.717 20 H 0.395 0.605 21 H 0.142 0.858 22 H 0.189 0.811 23 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 -3.848 0.025 3.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.219 4.219 3 Si 0.828 3.172 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.460 4.460 8 H 0.136 0.864 9 N -0.142 5.142 10 C 0.115 3.885 11 C -0.333 4.333 12 C 0.018 3.982 13 N -0.290 5.290 14 C 0.056 3.944 15 N -0.216 5.216 16 C -0.207 4.207 17 S 0.356 5.644 18 C -0.472 4.472 19 H 0.093 0.907 20 H 0.229 0.771 21 H 0.160 0.840 22 H 0.205 0.795 23 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -0.856 -4.247 0.025 4.332 hybrid contribution 0.130 1.558 0.000 1.564 sum -0.726 -2.688 0.026 2.785 Atomic orbital electron populations 1.69759 1.07640 1.30284 1.47349 1.26372 0.96555 1.03442 0.95503 0.84767 0.77602 0.75129 0.79709 1.18623 1.20421 1.18642 1.20199 0.94111 0.82665 1.49051 0.86411 1.41134 1.08063 1.02598 1.62384 1.17407 0.92413 0.83449 0.95241 1.21375 0.91514 1.00365 1.20084 1.22608 1.00497 0.85463 0.89642 1.67194 1.04879 1.30970 1.25993 1.19714 0.91778 0.84934 0.97929 1.65883 1.04074 1.32139 1.19524 1.29004 0.94826 1.00148 0.96762 1.83546 1.02311 1.04911 1.73631 1.24195 0.98474 0.98683 1.25815 0.90740 0.77112 0.84034 0.79455 0.72873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.65 13.05 21.65 0.28 -46.37 14 2 C -0.02 -0.80 5.50 84.87 0.47 -0.33 14 3 Si 1.01 37.61 29.55 68.60 2.03 39.63 14 4 H -0.26 -9.42 7.11 99.48 0.71 -8.71 14 5 H -0.28 -10.31 7.11 99.48 0.71 -9.61 14 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 14 7 C -0.33 -16.17 9.57 84.05 0.80 -15.37 14 8 H 0.12 5.38 5.76 -2.91 -0.02 5.36 14 9 N -0.54 -26.38 5.43 -183.56 -1.00 -27.38 14 10 C 0.25 11.36 6.67 38.75 0.26 11.62 14 11 C -0.30 -12.47 9.38 22.53 0.21 -12.26 14 12 C 0.18 6.92 11.13 84.79 0.94 7.87 14 13 N -0.57 -24.91 10.41 -195.03 -2.03 -26.94 14 14 C 0.30 13.13 8.13 134.02 1.09 14.22 14 15 N -0.50 -19.37 10.56 -199.83 -2.11 -21.48 14 16 C 0.10 2.86 12.12 130.79 1.58 4.45 14 17 S 0.11 3.60 22.85 -56.49 -1.29 2.31 14 18 C -0.34 -14.98 6.49 23.11 0.15 -14.83 14 19 H 0.28 13.56 8.31 -92.71 -0.77 12.79 14 20 H 0.39 19.74 7.62 -92.70 -0.71 19.03 14 21 H 0.14 5.50 6.08 -2.91 -0.02 5.48 14 22 H 0.19 5.40 8.06 -2.91 -0.02 5.38 14 23 H 0.26 4.20 8.06 -2.91 -0.02 4.18 14 Total: -1.00 -61.64 226.05 1.95 -59.69 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.56 Total: 25.17 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 5.51 Total: -4.64 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -4.85 Total: -122.16 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.63 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.29 Total: 2.31 kcal Total: -61.64 1.95 -59.69 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260536521.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.975 kcal (2) G-P(sol) polarization free energy of solvation -61.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds