Wall clock time and date at job start Mon Mar 30 2020 02:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29853 * 127.31631 * 2 1 4 4 O 1.20565 * 112.93475 * 180.27073 * 3 2 1 5 5 C 1.33760 * 113.30814 * 359.70766 * 4 3 2 6 6 C 1.50699 * 127.06082 * 180.02562 * 5 4 3 7 7 F 1.39904 * 109.47194 * 269.95302 * 6 5 4 8 8 F 1.39895 * 109.47437 * 29.95894 * 6 5 4 9 9 F 1.39901 * 109.46776 * 149.96176 * 6 5 4 10 10 C 1.39659 * 105.87023 * 0.02562 * 5 4 3 11 11 C 1.41475 * 128.74100 * 179.97438 * 10 5 4 12 12 H 1.07998 * 119.99604 * 329.97342 * 11 10 5 13 13 C 1.39729 * 120.00153 * 149.97360 * 11 10 5 14 14 N 1.31012 * 119.99748 * 341.33340 * 13 11 10 15 15 Si 1.86798 * 120.00304 * 161.61039 * 13 11 10 16 16 H 1.48488 * 109.47460 * 179.72539 * 15 13 11 17 17 H 1.48501 * 109.46852 * 299.72516 * 15 13 11 18 18 H 1.48500 * 109.47099 * 59.71857 * 15 13 11 19 19 H 1.09000 * 109.47314 * 271.32990 * 1 2 3 20 20 H 1.09002 * 109.47564 * 31.33218 * 1 2 3 21 21 H 1.09002 * 109.47329 * 151.32953 * 1 2 3 22 22 H 0.97002 * 120.00068 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2941 1.0327 0.0000 4 8 3.4620 0.7333 -0.0052 5 6 3.6695 -0.5881 -0.0035 6 6 4.9985 -1.2987 -0.0082 7 9 5.4032 -1.5222 -1.3287 8 9 5.9516 -0.5096 0.6445 9 9 4.8742 -2.5242 0.6551 10 6 2.4017 -1.1739 0.0034 11 6 2.0608 -2.5469 0.0073 12 1 2.7144 -3.2668 -0.4627 13 6 0.8786 -2.9716 0.6191 14 7 0.2762 -2.1979 1.4880 15 14 0.1611 -4.6456 0.2041 16 1 -1.0827 -4.8589 0.9865 17 1 -0.1504 -4.7047 -1.2467 18 1 1.1463 -5.7040 0.5422 19 1 -0.3634 0.0239 1.0274 20 1 -0.3634 0.8778 -0.5344 21 1 -0.3634 -0.9017 -0.4930 22 1 -0.5443 -2.4928 1.9130 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260595461.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:42 Heat of formation + Delta-G solvation = -125.539687 kcal Electronic energy + Delta-G solvation = -15411.090286 eV Core-core repulsion = 12132.488776 eV Total energy + Delta-G solvation = -3278.601510 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.040 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.95409 -48.49855 -48.45746 -44.87694 -36.62238 -34.15315 -32.96112 -29.59609 -28.39602 -26.40369 -23.23809 -21.47034 -19.65687 -19.43158 -19.13000 -18.64883 -17.88629 -16.88597 -16.30914 -15.36933 -15.33247 -14.94274 -14.77008 -14.66933 -14.65785 -14.17140 -14.04947 -13.90527 -13.34388 -13.06118 -12.70798 -12.63026 -12.04285 -11.60276 -11.22379 -10.37831 -10.04607 -8.85901 -6.71474 0.64091 1.35765 1.43360 1.54675 1.63462 1.79465 2.18655 2.48479 2.89565 3.23136 3.63328 3.75381 4.02768 4.26258 4.78731 4.85830 4.98242 5.06650 5.20866 5.55532 6.05847 6.34707 6.60640 7.81015 8.14976 Molecular weight = 221.04amu Principal moments of inertia in cm(-1) A = 0.029501 B = 0.013612 C = 0.010220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.894422 B = 2056.543193 C = 2738.955951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 C -0.023 4.023 3 N -0.371 5.371 4 O 0.076 5.924 5 C -0.396 4.396 6 C 0.595 3.405 7 F -0.183 7.183 8 F -0.182 7.182 9 F -0.167 7.167 10 C 0.064 3.936 11 C -0.451 4.451 12 H 0.091 0.909 13 C 0.047 3.953 14 N -0.794 5.794 15 Si 0.988 3.012 16 H -0.260 1.260 17 H -0.256 1.256 18 H -0.261 1.261 19 H 0.078 0.922 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.372 -3.073 -1.514 3.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.187 4.187 3 N -0.075 5.075 4 O 0.005 5.995 5 C -0.455 4.455 6 C 0.540 3.460 7 F -0.165 7.165 8 F -0.163 7.163 9 F -0.148 7.148 10 C 0.058 3.942 11 C -0.479 4.479 12 H 0.109 0.891 13 C -0.173 4.173 14 N -0.418 5.418 15 Si 0.808 3.192 16 H -0.184 1.184 17 H -0.180 1.180 18 H -0.186 1.186 19 H 0.096 0.904 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.715 -1.770 -1.329 2.326 hybrid contribution 0.089 -1.287 0.024 1.290 sum -0.626 -3.057 -1.305 3.383 Atomic orbital electron populations 1.19836 0.84734 1.01247 1.02612 1.25175 0.99145 0.88279 1.06062 1.72896 0.90429 1.25912 1.18310 1.84071 1.19962 1.22279 1.73182 1.23358 0.95024 0.85223 1.41879 1.15993 0.80706 0.75908 0.73409 1.93169 1.91554 1.94919 1.36813 1.93126 1.67020 1.74549 1.81627 1.93168 1.95953 1.44801 1.80882 1.19989 0.87830 0.95112 0.91277 1.19108 1.06493 0.90313 1.32009 0.89104 1.26710 0.94974 1.03712 0.91930 1.69946 1.16122 1.39090 1.16662 0.85130 0.78225 0.75908 0.79953 1.18370 1.18017 1.18576 0.90394 0.91753 0.91316 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.12 8.57 71.23 0.61 -0.51 14 2 C -0.02 -1.17 7.24 45.32 0.33 -0.85 14 3 N -0.37 -18.99 11.96 -43.73 -0.52 -19.52 14 4 O 0.08 3.94 11.06 74.68 0.83 4.77 14 5 C -0.40 -20.25 6.95 26.03 0.18 -20.07 14 6 C 0.60 26.73 3.53 71.24 0.25 26.98 14 7 F -0.18 -7.75 17.30 44.97 0.78 -6.97 14 8 F -0.18 -7.65 17.30 44.97 0.78 -6.87 14 9 F -0.17 -7.47 15.98 44.97 0.72 -6.75 14 10 C 0.06 3.35 5.84 -19.66 -0.11 3.24 14 11 C -0.45 -22.48 8.41 23.43 0.20 -22.29 14 12 H 0.09 4.43 7.63 -2.91 -0.02 4.41 14 13 C 0.05 2.08 4.61 85.18 0.39 2.47 14 14 N -0.79 -35.98 10.02 21.80 0.22 -35.76 14 15 Si 0.99 33.63 29.60 68.60 2.03 35.66 14 16 H -0.26 -8.16 7.11 99.48 0.71 -7.45 14 17 H -0.26 -8.53 7.11 99.48 0.71 -7.82 14 18 H -0.26 -8.91 7.11 99.48 0.71 -8.20 14 19 H 0.08 3.25 7.35 -2.39 -0.02 3.23 14 20 H 0.06 2.35 8.14 -2.39 -0.02 2.33 14 21 H 0.07 2.81 7.16 -2.39 -0.02 2.79 14 22 H 0.30 12.02 8.30 -92.71 -0.77 11.25 14 Total: -1.00 -53.85 218.26 7.95 -45.91 By element: Atomic # 1 Polarization: -0.73 SS G_CDS: 1.27 Total: 0.55 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 1.85 Total: -11.02 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.30 Total: -55.28 kcal Atomic # 8 Polarization: 3.94 SS G_CDS: 0.83 Total: 4.77 kcal Atomic # 9 Polarization: -22.86 SS G_CDS: 2.27 Total: -20.58 kcal Atomic # 14 Polarization: 33.63 SS G_CDS: 2.03 Total: 35.66 kcal Total: -53.85 7.95 -45.91 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595461.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.634 kcal (2) G-P(sol) polarization free energy of solvation -53.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds