Wall clock time and date at job start Mon Mar 30 2020 02:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00263 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00073 * 3 2 1 7 7 C 1.38834 * 119.99743 * 180.27893 * 2 1 3 8 8 H 1.07995 * 119.99334 * 179.72370 * 7 2 1 9 9 N 1.36825 * 119.99969 * 359.72317 * 7 2 1 10 10 C 1.38525 * 120.00008 * 180.02562 * 9 7 2 11 11 C 1.38767 * 120.76087 * 359.70971 * 10 9 7 12 12 C 1.38329 * 119.95918 * 179.73367 * 11 10 9 13 13 N 1.31829 * 120.96396 * 0.58666 * 12 11 10 14 14 C 1.32257 * 121.76511 * 359.69233 * 13 12 11 15 15 S 1.76771 * 133.36102 * 180.02562 * 14 13 12 16 16 N 1.69567 * 95.50263 * 180.02562 * 15 14 13 17 17 C 1.28874 * 108.40557 * 359.97438 * 16 15 14 18 18 C 1.40290 * 118.81286 * 359.97438 * 17 16 15 19 19 H 0.97000 * 120.00322 * 179.97438 * 1 2 3 20 20 H 0.97004 * 120.00370 * 359.97438 * 9 7 2 21 21 H 1.07995 * 120.02354 * 0.03212 * 11 10 9 22 22 H 1.08000 * 119.52058 * 180.25801 * 12 11 10 23 23 H 1.08000 * 120.59334 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 1.2845 2.7465 0.0006 5 1 3.1033 1.6964 1.2125 6 1 3.1032 1.6964 -1.2125 7 6 2.0096 -1.2024 -0.0059 8 1 3.0896 -1.2023 -0.0104 9 7 1.3255 -2.3873 -0.0059 10 6 2.0180 -3.5869 -0.0112 11 6 3.4055 -3.6054 -0.0226 12 6 4.0803 -4.8129 -0.0221 13 7 3.4244 -5.9565 -0.0226 14 6 2.1026 -6.0010 -0.0175 15 16 0.9328 -7.3262 -0.0159 16 7 -0.4402 -6.3312 -0.0090 17 6 -0.0521 -5.1023 -0.0074 18 6 1.3237 -4.8277 -0.0108 19 1 -0.4850 -0.8400 -0.0004 20 1 0.3554 -2.3873 -0.0015 21 1 3.9583 -2.6777 -0.0268 22 1 5.1603 -4.8190 -0.0268 23 1 -0.7731 -4.2982 -0.0027 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260597520.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:00 Heat of formation + Delta-G solvation = 53.136725 kcal Electronic energy + Delta-G solvation = -12180.971028 eV Core-core repulsion = 9927.019871 eV Total energy + Delta-G solvation = -2253.951157 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.032 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.76506 -36.60230 -36.12359 -32.73386 -29.89870 -29.12087 -25.38648 -24.16141 -22.26279 -20.99758 -18.63121 -18.16713 -16.40193 -15.80387 -15.23624 -14.76026 -14.22742 -14.13419 -13.44302 -13.28636 -12.36381 -12.26984 -11.82060 -11.32177 -11.08790 -10.95201 -10.54849 -10.38544 -9.84025 -9.45633 -8.68161 -8.62004 -8.21073 -7.45689 -7.18904 -4.36056 1.12286 1.89845 2.10654 2.53719 2.85635 3.01979 3.07036 3.20415 3.77254 4.31635 4.39079 4.74373 5.20262 5.32872 5.35376 6.00728 6.06881 6.14799 6.46184 6.65554 6.94923 7.16926 7.27853 7.48087 7.84070 8.58945 8.64426 8.67146 9.93927 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.047334 B = 0.008175 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.398506 B = 3424.119889 C = 4005.674138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.001 3.999 3 Si 1.092 2.908 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.382 4.382 8 H 0.113 0.887 9 N -0.513 5.513 10 C 0.257 3.743 11 C -0.274 4.274 12 C 0.166 3.834 13 N -0.549 5.549 14 C 0.146 3.854 15 S 0.157 5.843 16 N -0.486 5.486 17 C 0.153 3.847 18 C -0.303 4.303 19 H 0.270 0.730 20 H 0.388 0.612 21 H 0.132 0.868 22 H 0.149 0.851 23 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 -2.089 -0.008 4.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.207 4.207 3 Si 0.915 3.085 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.513 4.513 8 H 0.130 0.870 9 N -0.110 5.110 10 C 0.120 3.880 11 C -0.304 4.304 12 C 0.010 3.990 13 N -0.269 5.269 14 C -0.111 4.111 15 S 0.301 5.699 16 N -0.302 5.302 17 C -0.050 4.050 18 C -0.325 4.325 19 H 0.082 0.918 20 H 0.224 0.776 21 H 0.150 0.850 22 H 0.166 0.834 23 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.887 -2.880 -0.012 4.078 hybrid contribution -0.092 0.862 0.006 0.867 sum 2.795 -2.017 -0.006 3.447 Atomic orbital electron populations 1.70957 1.06775 1.30499 1.40585 1.26972 0.96342 1.03483 0.93936 0.83113 0.74796 0.72841 0.77741 1.19663 1.20152 1.20145 1.20916 0.95259 0.83780 1.51344 0.86954 1.41166 1.08092 1.03594 1.58160 1.17383 0.91373 0.83155 0.96056 1.21083 0.92334 0.99552 1.17450 1.22296 0.98886 0.86685 0.91138 1.66954 1.05099 1.29319 1.25562 1.23890 0.95160 0.95231 0.96769 1.84512 0.92810 1.13282 1.79256 1.76213 1.19928 1.05306 1.28787 1.22021 0.94092 0.94531 0.94319 1.19222 0.93213 0.94483 1.25538 0.91798 0.77640 0.84980 0.83363 0.82070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.80 13.69 55.49 0.76 -20.04 14 2 C 0.00 0.03 5.50 -17.45 -0.10 -0.07 14 3 Si 1.09 19.74 29.92 -169.99 -5.09 14.65 14 4 H -0.27 -5.05 7.11 56.52 0.40 -4.65 14 5 H -0.28 -4.74 7.11 56.52 0.40 -4.34 14 6 H -0.28 -4.74 7.11 56.52 0.40 -4.34 14 7 C -0.38 -8.61 9.56 -15.10 -0.14 -8.75 14 8 H 0.11 2.41 5.72 -52.49 -0.30 2.11 14 9 N -0.51 -11.15 5.41 -9.09 -0.05 -11.20 14 10 C 0.26 5.46 6.71 -83.13 -0.56 4.91 14 11 C -0.27 -5.39 9.31 -39.35 -0.37 -5.76 14 12 C 0.17 3.07 11.18 -17.52 -0.20 2.88 14 13 N -0.55 -11.30 10.37 -11.54 -0.12 -11.42 14 14 C 0.15 3.07 7.88 -16.39 -0.13 2.94 14 15 S 0.16 3.00 23.91 -107.50 -2.57 0.43 14 16 N -0.49 -9.65 11.95 29.70 0.36 -9.29 14 17 C 0.15 2.97 10.91 -18.02 -0.20 2.77 14 18 C -0.30 -6.35 5.96 -106.63 -0.64 -6.99 14 19 H 0.27 6.36 6.77 -40.82 -0.28 6.09 14 20 H 0.39 8.13 5.96 -40.82 -0.24 7.89 14 21 H 0.13 2.45 6.01 -52.49 -0.32 2.13 14 22 H 0.15 2.14 8.06 -52.49 -0.42 1.72 14 23 H 0.16 2.74 7.51 -52.49 -0.39 2.34 14 LS Contribution 223.63 15.07 3.37 3.37 Total: -1.00 -26.21 223.63 -6.41 -32.62 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -0.75 Total: 8.95 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -2.32 Total: -8.08 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.95 Total: -51.95 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.09 Total: 14.65 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.57 Total: 0.43 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -26.21 -6.41 -32.62 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597520.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.761 kcal (2) G-P(sol) polarization free energy of solvation -26.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds