Wall clock time and date at job start Mon Mar 30 2020 02:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00263 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00073 * 3 2 1 7 7 C 1.38834 * 119.99743 * 180.27893 * 2 1 3 8 8 H 1.07995 * 119.99334 * 179.72370 * 7 2 1 9 9 N 1.36825 * 119.99969 * 359.72317 * 7 2 1 10 10 C 1.38525 * 120.00008 * 180.02562 * 9 7 2 11 11 C 1.38767 * 120.76087 * 359.70971 * 10 9 7 12 12 C 1.38329 * 119.95918 * 179.73367 * 11 10 9 13 13 N 1.31829 * 120.96396 * 0.58666 * 12 11 10 14 14 C 1.32257 * 121.76511 * 359.69233 * 13 12 11 15 15 S 1.76771 * 133.36102 * 180.02562 * 14 13 12 16 16 N 1.69567 * 95.50263 * 180.02562 * 15 14 13 17 17 C 1.28874 * 108.40557 * 359.97438 * 16 15 14 18 18 C 1.40290 * 118.81286 * 359.97438 * 17 16 15 19 19 H 0.97000 * 120.00322 * 179.97438 * 1 2 3 20 20 H 0.97004 * 120.00370 * 359.97438 * 9 7 2 21 21 H 1.07995 * 120.02354 * 0.03212 * 11 10 9 22 22 H 1.08000 * 119.52058 * 180.25801 * 12 11 10 23 23 H 1.08000 * 120.59334 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 1.2845 2.7465 0.0006 5 1 3.1033 1.6964 1.2125 6 1 3.1032 1.6964 -1.2125 7 6 2.0096 -1.2024 -0.0059 8 1 3.0896 -1.2023 -0.0104 9 7 1.3255 -2.3873 -0.0059 10 6 2.0180 -3.5869 -0.0112 11 6 3.4055 -3.6054 -0.0226 12 6 4.0803 -4.8129 -0.0221 13 7 3.4244 -5.9565 -0.0226 14 6 2.1026 -6.0010 -0.0175 15 16 0.9328 -7.3262 -0.0159 16 7 -0.4402 -6.3312 -0.0090 17 6 -0.0521 -5.1023 -0.0074 18 6 1.3237 -4.8277 -0.0108 19 1 -0.4850 -0.8400 -0.0004 20 1 0.3554 -2.3873 -0.0015 21 1 3.9583 -2.6777 -0.0268 22 1 5.1603 -4.8190 -0.0268 23 1 -0.7731 -4.2982 -0.0027 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260597520.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:00 Heat of formation + Delta-G solvation = 36.969235 kcal Electronic energy + Delta-G solvation = -12181.672103 eV Core-core repulsion = 9927.019871 eV Total energy + Delta-G solvation = -2254.652232 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.032 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.36536 -38.21432 -37.70694 -34.38067 -31.47194 -30.74610 -27.04521 -25.74317 -23.86016 -22.57299 -20.26548 -19.76174 -17.99698 -17.39385 -16.81586 -16.34386 -15.83934 -15.58045 -14.96514 -14.82896 -13.97041 -13.87706 -13.40714 -12.89494 -12.52359 -12.51126 -11.98814 -11.94388 -11.41765 -11.04420 -10.28230 -10.19147 -9.82152 -9.16798 -8.78631 -6.09793 -0.45124 0.32031 0.48112 0.96647 1.29218 1.57776 1.66948 1.81475 2.31051 2.71996 2.79898 3.10773 3.66039 3.78307 3.85595 4.40989 4.54636 4.59828 4.90651 5.08840 5.31592 5.58002 5.71442 5.80984 6.20442 6.94903 7.01834 7.08955 8.25860 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.047334 B = 0.008175 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.398506 B = 3424.119889 C = 4005.674138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.037 4.037 3 Si 1.135 2.865 4 H -0.284 1.284 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.398 4.398 8 H 0.120 0.880 9 N -0.531 5.531 10 C 0.256 3.744 11 C -0.286 4.286 12 C 0.177 3.823 13 N -0.556 5.556 14 C 0.121 3.879 15 S 0.187 5.813 16 N -0.494 5.494 17 C 0.152 3.848 18 C -0.315 4.315 19 H 0.262 0.738 20 H 0.387 0.613 21 H 0.144 0.856 22 H 0.194 0.806 23 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 -2.593 -0.013 5.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.239 4.239 3 Si 0.953 3.047 4 H -0.210 1.210 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.528 4.528 8 H 0.138 0.862 9 N -0.130 5.130 10 C 0.121 3.879 11 C -0.317 4.317 12 C 0.020 3.980 13 N -0.276 5.276 14 C -0.135 4.135 15 S 0.332 5.668 16 N -0.309 5.309 17 C -0.050 4.050 18 C -0.336 4.336 19 H 0.074 0.926 20 H 0.222 0.778 21 H 0.162 0.838 22 H 0.210 0.790 23 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.308 -3.435 -0.017 5.510 hybrid contribution -0.472 0.721 0.007 0.862 sum 3.836 -2.714 -0.010 4.699 Atomic orbital electron populations 1.71029 1.07792 1.30117 1.43988 1.28172 0.96331 1.06181 0.93183 0.82613 0.73918 0.69324 0.78857 1.20951 1.18562 1.18554 1.21149 0.95730 0.84160 1.51747 0.86218 1.41149 1.08047 1.03569 1.60187 1.17774 0.92287 0.83200 0.94660 1.21367 0.91868 1.00750 1.17680 1.22995 1.00827 0.85502 0.88663 1.67071 1.04913 1.30313 1.25335 1.24275 0.95789 0.96074 0.97321 1.84385 0.91704 1.12116 1.78644 1.76166 1.20746 1.05606 1.28423 1.22254 0.94129 0.94943 0.93712 1.19468 0.93973 0.94606 1.25545 0.92638 0.77777 0.83837 0.78966 0.80169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.35 13.69 21.65 0.30 -44.06 14 2 C -0.04 -1.67 5.50 84.88 0.47 -1.20 14 3 Si 1.14 39.25 29.92 68.60 2.05 41.30 14 4 H -0.28 -10.28 7.11 99.48 0.71 -9.57 14 5 H -0.26 -8.28 7.11 99.48 0.71 -7.58 14 6 H -0.26 -8.28 7.11 99.48 0.71 -7.58 14 7 C -0.40 -17.81 9.56 84.06 0.80 -17.01 14 8 H 0.12 5.00 5.72 -2.91 -0.02 4.98 14 9 N -0.53 -23.03 5.41 -182.67 -0.99 -24.02 14 10 C 0.26 10.62 6.71 39.19 0.26 10.88 14 11 C -0.29 -10.69 9.31 22.42 0.21 -10.48 14 12 C 0.18 6.00 11.18 84.71 0.95 6.94 14 13 N -0.56 -21.48 10.37 -190.43 -1.98 -23.46 14 14 C 0.12 4.87 7.88 85.26 0.67 5.54 14 15 S 0.19 6.80 23.91 -56.49 -1.35 5.45 14 16 N -0.49 -18.84 11.95 -59.96 -0.72 -19.56 14 17 C 0.15 5.76 10.91 85.63 0.93 6.69 14 18 C -0.31 -12.81 5.96 -21.17 -0.13 -12.94 14 19 H 0.26 12.78 6.77 -92.71 -0.63 12.15 14 20 H 0.39 16.51 5.96 -92.71 -0.55 15.96 14 21 H 0.14 5.00 6.01 -2.91 -0.02 4.98 14 22 H 0.19 4.69 8.06 -2.91 -0.02 4.66 14 23 H 0.18 5.99 7.51 -2.91 -0.02 5.97 14 Total: -1.00 -54.27 223.63 2.35 -51.92 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.86 Total: 23.98 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 4.17 Total: -11.57 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -3.38 Total: -111.09 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.05 Total: 41.30 kcal Atomic # 16 Polarization: 6.80 SS G_CDS: -1.35 Total: 5.45 kcal Total: -54.27 2.35 -51.92 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597520.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.893 kcal (2) G-P(sol) polarization free energy of solvation -54.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds