Wall clock time and date at job start Mon Mar 30 2020 03:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47368 * 2 1 4 4 C 1.39049 * 120.11097 * 270.02481 * 3 2 1 5 5 N 1.31567 * 121.50657 * 179.71426 * 4 3 2 6 6 C 1.32621 * 121.75155 * 0.53390 * 5 4 3 7 7 C 1.47636 * 119.97852 * 179.74824 * 6 5 4 8 8 O 1.21491 * 119.99431 * 180.43322 * 7 6 5 9 9 O 1.34776 * 120.00360 * 0.43319 * 7 6 5 10 10 C 1.41810 * 120.03598 * 359.47566 * 6 5 4 11 11 C 1.40890 * 120.72339 * 180.23195 * 10 6 5 12 12 H 1.08004 * 120.00247 * 31.66055 * 11 10 6 13 13 C 1.40311 * 120.00472 * 211.65978 * 11 10 6 14 14 N 1.30610 * 119.99166 * 11.66213 * 13 11 10 15 15 Si 1.86794 * 120.00407 * 191.66376 * 13 11 10 16 16 H 1.48500 * 109.47084 * 90.00145 * 15 13 11 17 17 H 1.48502 * 109.46978 * 210.00018 * 15 13 11 18 18 H 1.48497 * 109.47040 * 329.99988 * 15 13 11 19 19 C 1.36863 * 120.11313 * 90.00310 * 3 2 1 20 20 H 1.08997 * 109.46494 * 300.00150 * 1 2 3 21 21 H 1.08998 * 109.47383 * 59.99603 * 1 2 3 22 22 H 1.08994 * 109.47215 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47117 * 240.00390 * 2 1 3 24 24 H 1.08998 * 109.47383 * 120.00397 * 2 1 3 25 25 H 1.07994 * 119.24464 * 0.02562 * 4 3 2 26 26 H 0.96694 * 117.00214 * 179.97438 * 9 7 6 27 27 H 0.97009 * 119.99693 * 174.97672 * 14 13 11 28 28 H 1.08001 * 120.81366 * 0.03935 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2644 2.0786 -1.2028 5 7 2.6976 3.3205 -1.2349 6 6 2.9442 4.0025 -0.1245 7 6 3.4347 5.3926 -0.2062 8 8 3.6681 6.0150 0.8107 9 8 3.6234 5.9711 -1.4087 10 6 2.7314 3.3992 1.1411 11 6 2.9840 4.1120 2.3298 12 1 2.8417 5.1822 2.3584 13 6 3.4204 3.4316 3.4767 14 7 3.8103 2.1881 3.3894 15 14 3.4436 4.3040 5.1282 16 1 2.1394 4.1070 5.8105 17 1 4.5317 3.7432 5.9690 18 1 3.6782 5.7552 4.9182 19 6 2.2614 2.0681 1.1839 20 1 -0.3632 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 2.0802 1.5599 -2.1320 26 1 3.9454 6.8829 -1.4116 27 1 4.1803 1.7401 4.1662 28 1 2.0870 1.5731 2.1278 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260654247.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:18 Heat of formation + Delta-G solvation = -100.693863 kcal Electronic energy + Delta-G solvation = -14714.364415 eV Core-core repulsion = 12114.530135 eV Total energy + Delta-G solvation = -2599.834279 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.13504 -39.85155 -36.89017 -36.01623 -35.28618 -32.43788 -30.62295 -27.98527 -25.76760 -23.82550 -23.25516 -21.48799 -19.29017 -18.92832 -17.88736 -17.38457 -16.51589 -16.33513 -15.69945 -15.07268 -14.70575 -14.40330 -14.19103 -13.75774 -13.54210 -13.30114 -13.08082 -12.85575 -12.81763 -12.26268 -12.24099 -11.92221 -11.73716 -11.39102 -10.89000 -10.22803 -9.97510 -9.51017 -8.86599 -6.63874 0.17542 0.90383 1.33844 1.46211 1.49678 1.88999 2.14362 2.50082 2.63477 3.55251 4.00115 4.16983 4.28250 4.56625 4.66837 4.81144 4.86886 4.88857 5.06074 5.13113 5.16365 5.35188 5.45983 5.71072 5.75351 5.84185 6.00284 6.45161 6.53187 6.64453 7.25952 7.63375 8.05763 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.013767 C = 0.008481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.374870 B = 2033.324991 C = 3300.830867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 C -0.095 4.095 4 C -0.019 4.019 5 N -0.432 5.432 6 C -0.115 4.115 7 C 0.537 3.463 8 O -0.549 6.549 9 O -0.509 6.509 10 C 0.077 3.923 11 C -0.435 4.435 12 H 0.099 0.901 13 C 0.033 3.967 14 N -0.795 5.795 15 Si 0.989 3.011 16 H -0.250 1.250 17 H -0.257 1.257 18 H -0.268 1.268 19 C -0.130 4.130 20 H 0.039 0.961 21 H 0.055 0.945 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.162 0.838 26 H 0.415 0.585 27 H 0.301 0.699 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 -3.302 -0.869 4.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.098 4.098 4 C -0.188 4.188 5 N -0.142 5.142 6 C -0.246 4.246 7 C 0.386 3.614 8 O -0.442 6.442 9 O -0.321 6.321 10 C 0.071 3.929 11 C -0.462 4.462 12 H 0.116 0.884 13 C -0.186 4.186 14 N -0.419 5.419 15 Si 0.809 3.191 16 H -0.174 1.174 17 H -0.181 1.181 18 H -0.192 1.192 19 C -0.156 4.156 20 H 0.058 0.942 21 H 0.075 0.925 22 H 0.099 0.901 23 H 0.107 0.893 24 H 0.085 0.915 25 H 0.180 0.820 26 H 0.274 0.726 27 H 0.112 0.888 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.036 -3.254 -1.219 4.614 hybrid contribution 0.403 0.706 1.374 1.596 sum -2.633 -2.548 0.155 3.667 Atomic orbital electron populations 1.21676 0.93758 1.02504 1.01502 1.20483 0.96847 0.90585 1.03141 1.20869 0.97373 0.97921 0.93601 1.22362 1.07855 0.91035 0.97534 1.66985 1.07257 1.08752 1.31170 1.19716 1.20574 0.94115 0.90208 1.20570 0.74050 0.86560 0.80213 1.90727 1.51736 1.64886 1.36811 1.84691 1.79848 1.34494 1.33074 1.18541 0.88678 0.93254 0.92411 1.20523 1.34646 0.97267 0.93775 0.88361 1.27064 0.91940 0.95094 1.04521 1.69668 1.25964 1.11882 1.34395 0.85089 0.79992 0.79045 0.75021 1.17408 1.18052 1.19205 1.21344 1.01538 0.94898 0.97819 0.94179 0.92546 0.90103 0.89282 0.91540 0.82046 0.72636 0.88804 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.90 71.98 0.71 -2.94 15 2 C -0.07 -2.26 6.07 29.85 0.18 -2.08 15 3 C -0.10 -4.02 5.12 -19.99 -0.10 -4.12 15 4 C -0.02 -0.81 10.84 84.93 0.92 0.11 15 5 N -0.43 -21.67 10.12 -183.09 -1.85 -23.52 15 6 C -0.11 -6.19 6.81 42.39 0.29 -5.90 15 7 C 0.54 27.28 8.29 70.30 0.58 27.86 15 8 O -0.55 -29.58 14.26 19.86 0.28 -29.29 15 9 O -0.51 -20.98 13.25 -56.87 -0.75 -21.74 15 10 C 0.08 4.22 5.54 -21.01 -0.12 4.11 15 11 C -0.44 -23.89 7.86 23.42 0.18 -23.70 15 12 H 0.10 5.63 5.65 -2.91 -0.02 5.61 15 13 C 0.03 1.62 5.24 85.38 0.45 2.07 15 14 N -0.80 -38.82 11.13 21.89 0.24 -38.58 15 15 Si 0.99 37.64 29.58 68.60 2.03 39.67 15 16 H -0.25 -8.89 7.11 99.48 0.71 -8.18 15 17 H -0.26 -8.96 7.11 99.48 0.71 -8.25 15 18 H -0.27 -10.68 7.11 99.48 0.71 -9.97 15 19 C -0.13 -6.41 8.35 22.68 0.19 -6.22 15 20 H 0.04 1.17 8.14 -2.39 -0.02 1.15 15 21 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 22 H 0.08 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.09 2.34 8.09 -2.38 -0.02 2.32 15 24 H 0.07 2.07 8.08 -2.39 -0.02 2.05 15 25 H 0.16 5.71 8.06 -2.91 -0.02 5.69 15 26 H 0.41 11.86 9.11 -74.06 -0.67 11.19 15 27 H 0.30 12.95 8.30 -92.70 -0.77 12.18 15 28 H 0.12 6.05 6.59 -2.91 -0.02 6.03 15 Total: -1.00 -65.15 251.98 3.76 -61.39 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.52 Total: 22.89 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 3.29 Total: -10.82 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -1.61 Total: -62.10 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.47 Total: -51.03 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -65.15 3.76 -61.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654247.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.301 kcal (2) G-P(sol) polarization free energy of solvation -65.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds