Wall clock time and date at job start Mon Mar 30 2020 02:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34595 * 126.32145 * 2 1 4 4 C 1.34943 * 107.60906 * 179.97438 * 3 2 1 5 5 C 1.39800 * 125.79984 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99986 * 354.31831 * 5 4 3 7 7 C 1.40338 * 120.00125 * 174.31443 * 5 4 3 8 8 N 1.30622 * 120.00071 * 6.08353 * 7 5 4 9 9 Si 1.86803 * 120.00139 * 186.08279 * 7 5 4 10 10 H 1.48496 * 109.47315 * 94.98058 * 9 7 5 11 11 H 1.48497 * 109.47205 * 214.98353 * 9 7 5 12 12 H 1.48507 * 109.46972 * 334.98226 * 9 7 5 13 13 N 1.32815 * 108.40337 * 359.76232 * 4 3 2 14 14 C 1.33065 * 108.64415 * 0.39018 * 13 4 3 15 15 C 1.50700 * 126.00647 * 179.87275 * 14 13 4 16 16 F 1.39900 * 109.47177 * 269.69132 * 15 14 13 17 17 F 1.39908 * 109.47309 * 29.68908 * 15 14 13 18 18 F 1.39897 * 109.47534 * 149.69034 * 15 14 13 19 19 H 1.09005 * 109.46821 * 270.02675 * 1 2 3 20 20 H 1.08998 * 109.47195 * 30.02404 * 1 2 3 21 21 H 1.08995 * 109.47417 * 150.02510 * 1 2 3 22 22 H 0.97004 * 120.00160 * 180.02562 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3043 1.0844 0.0000 4 6 3.5824 0.6515 0.0006 5 6 4.7207 1.4631 0.0003 6 1 4.6201 2.5343 -0.0931 7 6 5.9941 0.8858 0.1213 8 7 6.1254 -0.4138 0.1147 9 14 7.5014 1.9760 0.2919 10 1 7.8300 2.1448 1.7302 11 1 8.6498 1.3458 -0.4075 12 1 7.2227 3.3040 -0.3113 13 7 3.5752 -0.6766 0.0062 14 6 2.3121 -1.0952 0.0005 15 6 1.8547 -2.5311 0.0012 16 9 1.7131 -2.9761 -1.3175 17 9 2.8016 -3.3219 0.6611 18 9 0.6248 -2.6285 0.6608 19 1 -0.3633 0.0005 1.0277 20 1 -0.3633 0.8897 -0.5142 21 1 -0.3634 -0.8901 -0.5134 22 1 7.0055 -0.8128 0.1988 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260681068.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:44 Heat of formation + Delta-G solvation = -167.965475 kcal Electronic energy + Delta-G solvation = -15193.157638 eV Core-core repulsion = 11912.716408 eV Total energy + Delta-G solvation = -3280.441230 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.040 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -51.14608 -48.67347 -48.61864 -43.35214 -36.00113 -35.12324 -33.02385 -29.88181 -28.28254 -25.17254 -23.01205 -22.02036 -19.78512 -19.54824 -19.27447 -18.57697 -17.03884 -16.87088 -16.16016 -15.59592 -15.48986 -15.11586 -15.01290 -14.85823 -14.81018 -14.42352 -13.80232 -13.66978 -13.34594 -13.01424 -12.78468 -12.68165 -11.97892 -11.95966 -11.27467 -10.51802 -9.60155 -8.68743 -6.81064 0.70950 1.40767 1.44311 1.58597 1.60677 2.07803 2.12320 2.49145 2.81607 3.09514 3.12487 3.49966 4.16416 4.49078 4.61907 4.70760 4.88568 5.07809 5.42446 5.58623 5.98238 6.34625 6.56016 7.61008 8.27435 Molecular weight = 221.04amu Principal moments of inertia in cm(-1) A = 0.042496 B = 0.009858 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.724864 B = 2839.783707 C = 3316.727321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.111 4.111 3 O -0.242 6.242 4 C 0.302 3.698 5 C -0.456 4.456 6 H 0.111 0.889 7 C 0.029 3.971 8 N -0.767 5.767 9 Si 1.017 2.983 10 H -0.259 1.259 11 H -0.264 1.264 12 H -0.246 1.246 13 N -0.551 5.551 14 C -0.114 4.114 15 C 0.563 3.437 16 F -0.178 7.178 17 F -0.180 7.180 18 F -0.163 7.163 19 H 0.089 0.911 20 H 0.087 0.913 21 H 0.090 0.910 22 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 0.295 0.284 4.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.169 4.169 3 O -0.139 6.139 4 C 0.118 3.882 5 C -0.491 4.491 6 H 0.129 0.871 7 C -0.193 4.193 8 N -0.391 5.391 9 Si 0.835 3.165 10 H -0.184 1.184 11 H -0.189 1.189 12 H -0.169 1.169 13 N -0.283 5.283 14 C -0.238 4.238 15 C 0.508 3.492 16 F -0.159 7.159 17 F -0.161 7.161 18 F -0.144 7.144 19 H 0.108 0.892 20 H 0.106 0.894 21 H 0.108 0.892 22 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.241 -0.312 0.287 4.262 hybrid contribution -0.026 0.200 0.040 0.206 sum -4.267 -0.112 0.328 4.281 Atomic orbital electron populations 1.20244 0.81587 1.04433 1.04103 1.23450 0.95607 0.83506 1.14351 1.84473 1.18615 1.35571 1.75202 1.22726 0.82033 0.88398 0.95003 1.18791 0.87126 0.95108 1.48086 0.87116 1.27125 1.03288 0.97059 0.91847 1.70076 1.27147 1.13185 1.28716 0.84683 0.74003 0.78180 0.79675 1.18361 1.18872 1.16923 1.71193 1.16836 1.09510 1.30736 1.21633 0.93901 0.93394 1.14880 1.16832 0.74426 0.84484 0.73465 1.93160 1.95638 1.90648 1.36489 1.93155 1.65404 1.76389 1.81154 1.93150 1.43627 1.96645 1.81011 0.89216 0.89375 0.89179 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.49 9.38 71.24 0.67 -0.83 14 2 C -0.11 -5.15 7.38 25.15 0.19 -4.97 14 3 O -0.24 -12.77 10.82 -11.75 -0.13 -12.90 14 4 C 0.30 17.47 7.73 84.92 0.66 18.12 14 5 C -0.46 -24.64 9.45 23.16 0.22 -24.42 14 6 H 0.11 5.42 7.86 -2.91 -0.02 5.40 14 7 C 0.03 1.45 5.49 85.38 0.47 1.92 14 8 N -0.77 -41.86 11.91 21.89 0.26 -41.60 14 9 Si 1.02 36.41 29.57 68.60 2.03 38.44 14 10 H -0.26 -8.91 7.11 99.48 0.71 -8.20 14 11 H -0.26 -9.00 7.11 99.48 0.71 -8.30 14 12 H -0.25 -8.23 7.11 99.48 0.71 -7.53 14 13 N -0.55 -32.67 9.39 -297.41 -2.79 -35.46 14 14 C -0.11 -5.81 6.45 41.84 0.27 -5.54 14 15 C 0.56 24.50 3.41 71.24 0.24 24.75 14 16 F -0.18 -7.39 17.30 44.97 0.78 -6.61 14 17 F -0.18 -8.30 17.26 44.97 0.78 -7.53 14 18 F -0.16 -5.92 15.23 44.97 0.68 -5.23 14 19 H 0.09 2.49 8.14 -2.38 -0.02 2.47 14 20 H 0.09 2.42 8.14 -2.39 -0.02 2.40 14 21 H 0.09 2.56 7.12 -2.39 -0.02 2.54 14 22 H 0.29 14.15 8.29 -92.71 -0.77 13.38 14 Total: -1.00 -65.29 221.65 5.59 -59.70 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: 1.27 Total: 2.16 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 2.71 Total: 9.03 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -2.53 Total: -77.06 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.13 Total: -12.90 kcal Atomic # 9 Polarization: -21.61 SS G_CDS: 2.24 Total: -19.37 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Total: -65.29 5.59 -59.70 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260681068.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.264 kcal (2) G-P(sol) polarization free energy of solvation -65.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds