Wall clock time and date at job start Mon Mar 30 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36731 * 125.10783 * 2 1 4 4 C 1.34021 * 109.37096 * 180.21604 * 3 2 1 5 5 C 1.47728 * 106.89115 * 359.57563 * 4 3 2 6 6 C 1.45209 * 141.47032 * 180.26809 * 5 4 3 7 7 C 1.32084 * 114.56065 * 179.97438 * 6 5 4 8 8 C 1.50708 * 124.47714 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47101 * 89.97635 * 8 7 6 10 10 H 1.08003 * 119.99955 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00336 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00677 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99654 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47164 * 89.99704 * 13 11 9 15 15 H 1.48505 * 109.47357 * 209.99846 * 13 11 9 16 16 H 1.48498 * 109.47184 * 329.99806 * 13 11 9 17 17 S 1.75389 * 111.04800 * 359.97438 * 7 6 5 18 18 C 1.37454 * 106.00782 * 0.26093 * 5 4 3 19 19 H 1.08998 * 109.47275 * 270.25421 * 1 2 3 20 20 H 1.08994 * 109.47306 * 30.26552 * 1 2 3 21 21 H 1.09003 * 109.46814 * 150.26059 * 1 2 3 22 22 H 1.07999 * 125.31481 * 0.05860 * 3 2 1 23 23 H 1.08002 * 126.55714 * 179.84258 * 4 3 2 24 24 H 1.07999 * 122.71913 * 359.97293 * 6 5 4 25 25 H 1.08998 * 109.47131 * 209.97660 * 8 7 6 26 26 H 1.09001 * 109.47216 * 329.97179 * 8 7 6 27 27 H 0.96997 * 120.00569 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.1186 0.0000 4 6 3.5414 0.7551 -0.0048 5 6 3.5712 -0.7219 0.0024 6 6 4.4984 -1.8394 0.0075 7 6 3.9245 -3.0290 0.0140 8 6 4.6728 -4.3372 0.0196 9 6 4.9243 -4.7658 1.4422 10 1 4.5768 -4.1526 2.2605 11 6 5.5973 -5.9414 1.6993 12 7 5.8173 -6.3154 2.9408 13 14 6.1978 -7.0025 0.2840 14 1 7.5725 -6.5889 -0.0961 15 1 6.2076 -8.4272 0.7028 16 1 5.2909 -6.8349 -0.8798 17 16 2.1765 -2.8851 0.0153 18 6 2.2578 -1.1275 0.0051 19 1 -0.3634 0.0046 1.0276 20 1 -0.3633 0.8875 -0.5179 21 1 -0.3633 -0.8923 -0.5098 22 1 1.8895 2.1361 0.0009 23 1 4.3958 1.4156 -0.0084 24 1 5.5705 -1.7084 0.0059 25 1 4.0799 -5.0971 -0.4894 26 1 5.6249 -4.2134 -0.4964 27 1 6.2911 -7.1422 3.1216 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260749544.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:40 Heat of formation + Delta-G solvation = 50.152046 kcal Electronic energy + Delta-G solvation = -12135.884128 eV Core-core repulsion = 9985.343889 eV Total energy + Delta-G solvation = -2150.540239 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.69826 -37.23448 -34.95452 -33.08266 -31.44204 -28.57481 -26.82734 -24.64483 -22.73214 -21.12651 -19.95693 -18.98890 -18.61596 -16.39516 -16.22835 -15.99894 -15.67392 -15.16702 -14.37486 -14.10967 -13.88618 -13.72646 -13.40438 -13.23004 -12.79545 -12.48526 -12.36514 -11.97466 -11.74069 -11.56839 -11.40678 -10.79097 -10.05304 -8.82770 -8.45311 -8.29982 -6.36300 0.31751 0.55045 1.19955 1.32873 1.37696 1.39645 1.51345 2.16800 2.26961 2.35421 3.03972 3.82014 3.98802 4.19267 4.40138 4.47728 4.65147 4.66646 4.86252 4.91883 4.98982 5.04750 5.45209 5.51075 5.67590 5.77962 5.96667 6.24850 6.45331 6.68533 7.26716 8.86645 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.054443 B = 0.007063 C = 0.006821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.177367 B = 3963.200255 C = 4104.134448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.445 5.445 3 C 0.040 3.960 4 C -0.194 4.194 5 C -0.177 4.177 6 C -0.116 4.116 7 C -0.155 4.155 8 C 0.056 3.944 9 C -0.523 4.523 10 H 0.027 0.973 11 C 0.010 3.990 12 N -0.947 5.947 13 Si 0.950 3.050 14 H -0.262 1.262 15 H -0.280 1.280 16 H -0.244 1.244 17 S 0.115 5.885 18 C -0.061 4.061 19 H 0.079 0.921 20 H 0.121 0.879 21 H 0.076 0.924 22 H 0.220 0.780 23 H 0.162 0.838 24 H 0.136 0.864 25 H 0.034 0.966 26 H 0.045 0.955 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.165 13.811 -9.390 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.129 5.129 3 C -0.088 4.088 4 C -0.221 4.221 5 C -0.191 4.191 6 C -0.146 4.146 7 C -0.271 4.271 8 C 0.017 3.983 9 C -0.562 4.562 10 H 0.045 0.955 11 C -0.187 4.187 12 N -0.588 5.588 13 Si 0.772 3.228 14 H -0.187 1.187 15 H -0.206 1.206 16 H -0.168 1.168 17 S 0.370 5.630 18 C -0.284 4.284 19 H 0.097 0.903 20 H 0.140 0.860 21 H 0.095 0.905 22 H 0.236 0.764 23 H 0.179 0.821 24 H 0.153 0.847 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.628 12.685 -9.281 19.551 hybrid contribution 1.677 0.128 0.167 1.690 sum -9.951 12.813 -9.114 18.608 Atomic orbital electron populations 1.22327 0.74759 1.05858 1.04267 1.43674 1.06974 1.02062 1.60149 1.22367 0.89214 0.91950 1.05298 1.21896 0.97820 0.89977 1.12375 1.20794 0.90981 0.95476 1.11831 1.20325 0.99863 0.89796 1.04640 1.23946 0.95626 0.99412 1.08073 1.18180 0.95002 0.89051 0.96116 1.21140 1.36826 1.06724 0.91465 0.95483 1.25966 0.95378 0.98752 0.98626 1.70052 1.42888 1.24534 1.21279 0.85661 0.79891 0.77536 0.79669 1.18711 1.20602 1.16787 1.83366 1.05000 0.93119 1.81471 1.23379 0.94444 0.94121 1.16467 0.90255 0.86027 0.90486 0.76383 0.82056 0.84662 0.94770 0.93718 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 11.09 127.77 1.42 2.52 15 2 N -0.45 -11.79 3.18 -541.70 -1.72 -13.52 15 3 C 0.04 0.91 11.32 82.97 0.94 1.84 15 4 C -0.19 -5.64 11.13 23.82 0.27 -5.37 15 5 C -0.18 -6.82 7.03 -19.16 -0.13 -6.95 15 6 C -0.12 -5.03 10.25 23.10 0.24 -4.80 15 7 C -0.15 -7.09 5.59 24.73 0.14 -6.95 15 8 C 0.06 2.78 4.49 29.10 0.13 2.91 15 9 C -0.52 -31.34 9.65 25.60 0.25 -31.10 15 10 H 0.03 1.82 7.98 -2.91 -0.02 1.80 15 11 C 0.01 0.60 5.47 84.65 0.46 1.06 15 12 N -0.95 -60.26 13.96 21.45 0.30 -59.96 15 13 Si 0.95 44.22 27.47 68.60 1.88 46.11 15 14 H -0.26 -11.64 7.11 99.48 0.71 -10.94 15 15 H -0.28 -12.73 7.11 99.48 0.71 -12.03 15 16 H -0.24 -10.53 6.54 99.48 0.65 -9.88 15 17 S 0.12 4.55 23.22 -56.49 -1.31 3.24 15 18 C -0.06 -2.21 7.91 83.56 0.66 -1.55 15 19 H 0.08 1.16 8.14 -2.39 -0.02 1.14 15 20 H 0.12 1.05 8.14 -2.39 -0.02 1.03 15 21 H 0.08 1.30 8.14 -2.39 -0.02 1.28 15 22 H 0.22 2.47 8.06 -2.91 -0.02 2.45 15 23 H 0.16 3.83 8.06 -2.91 -0.02 3.81 15 24 H 0.14 5.59 8.06 -2.91 -0.02 5.57 15 25 H 0.03 1.65 7.20 -2.39 -0.02 1.63 15 26 H 0.04 2.12 7.57 -2.39 -0.02 2.10 15 27 H 0.27 15.82 8.31 -92.71 -0.77 15.05 15 Total: -1.00 -74.13 252.15 4.62 -69.51 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.11 Total: 3.00 kcal Atomic # 6 Polarization: -52.74 SS G_CDS: 4.36 Total: -48.38 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -1.42 Total: -73.48 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.11 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.31 Total: 3.24 kcal Total: -74.13 4.62 -69.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260749544.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.664 kcal (2) G-P(sol) polarization free energy of solvation -74.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds