Wall clock time and date at job start Mon Mar 30 2020 02:35:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86794 * 119.99856 * 2 1
4 4 H 1.48504 * 109.46969 * 269.99783 * 3 2 1
5 5 H 1.48497 * 109.47342 * 30.00074 * 3 2 1
6 6 H 1.48503 * 109.47126 * 149.99973 * 3 2 1
7 7 C 1.37877 * 119.99708 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99694 * 179.97438 * 7 2 1
9 9 C 1.50695 * 120.00417 * 359.97438 * 7 2 1
10 10 C 1.50704 * 109.47184 * 180.02562 * 9 7 2
11 11 O 1.33704 * 126.90817 * 270.02372 * 10 9 7
12 12 N 1.21102 * 113.63284 * 179.97438 * 11 10 9
13 13 C 1.31243 * 112.01878 * 359.97438 * 12 11 10
14 14 C 1.37810 * 126.91099 * 89.98281 * 10 9 7
15 15 C 1.40637 * 137.72422 * 0.02562 * 14 10 9
16 16 C 1.35763 * 119.39112 * 179.71100 * 15 14 10
17 17 C 1.39829 * 121.73631 * 0.60123 * 16 15 14
18 18 C 1.35810 * 122.01063 * 359.39634 * 17 16 15
19 19 F 1.35106 * 120.27104 * 180.25658 * 18 17 16
20 20 H 0.97002 * 119.99855 * 0.02562 * 1 2 3
21 21 H 1.09002 * 109.47043 * 60.00262 * 9 7 2
22 22 H 1.09004 * 109.47118 * 300.00246 * 9 7 2
23 23 H 1.07991 * 120.30313 * 0.02562 * 15 14 10
24 24 H 1.07993 * 119.12778 * 180.28145 * 16 15 14
25 25 H 1.08002 * 118.99752 * 179.68428 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0463 -1.4001
5 1 1.4466 2.6526 0.7000
6 1 3.5467 1.4402 0.7001
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 6 2.2304 -3.6446 -0.0005
11 8 2.7525 -4.2546 -1.0696
12 7 3.5187 -5.1502 -0.7915
13 6 3.6487 -5.3016 0.5056
14 6 2.7685 -4.2735 1.1014
15 6 2.6830 -4.1735 2.5016
16 6 3.4037 -5.0249 3.2755
17 6 4.2420 -5.9951 2.7178
18 6 4.3728 -6.1476 1.3747
19 9 5.1892 -7.1004 0.8737
20 1 -0.4850 0.8401 -0.0004
21 1 0.6241 -2.5567 -0.8903
22 1 0.6247 -2.5571 0.8897
23 1 2.0461 -3.4297 2.9569
24 1 3.3313 -4.9474 4.3502
25 1 4.7991 -6.6462 3.3753
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260805993.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:35:29
Heat of formation + Delta-G solvation = 8.004005 kcal
Electronic energy + Delta-G solvation = -14133.046544 eV
Core-core repulsion = 11414.465453 eV
Total energy + Delta-G solvation = -2718.581091 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 221.059 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-49.98735 -45.71998 -39.12270 -35.89824 -33.88337 -33.52146 -31.23380 -29.52454
-26.12129 -24.88823 -24.75121 -21.28911 -19.55610 -19.06414 -18.38992 -18.13650
-17.42320 -16.61407 -16.53523 -16.18881 -16.07411 -14.53990 -14.39122 -14.10373
-13.84190 -13.28055 -13.10022 -12.97894 -12.69701 -12.62913 -12.03925 -11.99854
-11.89148 -11.26807 -10.65202 -10.44929 -8.84358 -8.26169 -6.41850 -0.74747
0.40091 1.02772 1.43967 1.45907 1.55912 1.99101 2.39346 2.48204
2.66861 2.86090 3.06645 3.65203 3.77762 4.06056 4.21319 4.42170
4.53476 4.84624 5.06799 5.11808 5.19744 5.25264 5.41230 5.62712
5.77672 5.93972 6.64557 7.11552 7.27554 8.81519
Molecular weight = 221.06amu
Principal moments of inertia in cm(-1)
A = 0.041682 B = 0.007556 C = 0.007138
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 671.593666 B = 3704.594304 C = 3921.499817
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C 0.024 3.976
3 Si 0.965 3.035
4 H -0.275 1.275
5 H -0.275 1.275
6 H -0.268 1.268
7 C -0.542 4.542
8 H 0.053 0.947
9 C 0.098 3.902
10 C 0.060 3.940
11 O 0.107 5.893
12 N -0.408 5.408
13 C -0.001 4.001
14 C -0.198 4.198
15 C -0.044 4.044
16 C -0.119 4.119
17 C -0.080 4.080
18 C 0.074 3.926
19 F -0.143 7.143
20 H 0.272 0.728
21 H 0.036 0.964
22 H 0.061 0.939
23 H 0.153 0.847
24 H 0.184 0.816
25 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.936 -7.359 8.493 12.275
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.555 5.555
2 C -0.177 4.177
3 Si 0.789 3.211
4 H -0.201 1.201
5 H -0.200 1.200
6 H -0.193 1.193
7 C -0.580 4.580
8 H 0.072 0.928
9 C 0.060 3.940
10 C -0.009 4.009
11 O 0.048 5.952
12 N -0.118 5.118
13 C -0.150 4.150
14 C -0.203 4.203
15 C -0.063 4.063
16 C -0.137 4.137
17 C -0.101 4.101
18 C 0.053 3.947
19 F -0.121 7.121
20 H 0.081 0.919
21 H 0.054 0.946
22 H 0.079 0.921
23 H 0.170 0.830
24 H 0.202 0.798
25 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges 5.367 -7.949 7.361 12.091
hybrid contribution 0.207 0.850 -0.090 0.879
sum 5.574 -7.100 7.271 11.591
Atomic orbital electron populations
1.70007 1.07280 1.28616 1.49585 1.25695 0.95715 1.02479 0.93813
0.85444 0.78639 0.78494 0.78510 1.20066 1.19958 1.19260 1.21110
0.93099 0.90275 1.53502 0.92843 1.17955 0.90458 0.85748 0.99844
1.25824 0.96032 0.94514 0.84554 1.84585 1.41953 1.33765 1.34931
1.74115 1.13313 1.08535 1.15847 1.22301 1.01711 1.00359 0.90592
1.20163 1.03425 0.99617 0.97060 1.20622 0.98544 0.98832 0.88286
1.20983 0.96213 0.94272 1.02268 1.21232 0.98599 0.99326 0.90992
1.16523 0.96072 0.90740 0.91385 1.91458 1.70449 1.61688 1.88544
0.91926 0.94608 0.92075 0.82985 0.79828 0.79956
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -49.78 13.29 21.45 0.28 -49.50 15
2 C 0.02 1.23 5.46 84.65 0.46 1.69 15
3 Si 0.96 41.11 29.54 68.60 2.03 43.13 15
4 H -0.28 -11.59 7.11 99.48 0.71 -10.88 15
5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15
6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15
7 C -0.54 -28.40 9.09 25.60 0.23 -28.17 15
8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 15
9 C 0.10 4.70 5.55 29.10 0.16 4.86 15
10 C 0.06 2.65 6.77 25.59 0.17 2.82 15
11 O 0.11 4.87 11.06 74.53 0.82 5.70 15
12 N -0.41 -18.21 12.10 -49.06 -0.59 -18.81 15
13 C 0.00 -0.05 7.60 42.53 0.32 0.28 15
14 C -0.20 -7.76 6.48 -20.24 -0.13 -7.89 15
15 C -0.04 -1.31 10.08 22.28 0.22 -1.09 15
16 C -0.12 -2.61 9.91 22.08 0.22 -2.39 15
17 C -0.08 -1.85 9.86 22.09 0.22 -1.63 15
18 C 0.07 2.42 7.33 22.45 0.16 2.59 15
19 F -0.14 -4.78 17.28 44.97 0.78 -4.01 15
20 H 0.27 13.85 8.31 -92.71 -0.77 13.08 15
21 H 0.04 1.80 8.14 -2.39 -0.02 1.78 15
22 H 0.06 2.91 8.14 -2.39 -0.02 2.89 15
23 H 0.15 4.15 8.06 -2.91 -0.02 4.13 15
24 H 0.18 2.27 8.06 -2.91 -0.02 2.25 15
25 H 0.18 2.63 8.06 -2.91 -0.02 2.60 15
Total: -1.00 -61.37 239.21 6.58 -54.78
By element:
Atomic # 1 Polarization: -3.58 SS G_CDS: 1.22 Total: -2.36 kcal
Atomic # 6 Polarization: -30.98 SS G_CDS: 2.05 Total: -28.93 kcal
Atomic # 7 Polarization: -68.00 SS G_CDS: -0.31 Total: -68.31 kcal
Atomic # 8 Polarization: 4.87 SS G_CDS: 0.82 Total: 5.70 kcal
Atomic # 9 Polarization: -4.78 SS G_CDS: 0.78 Total: -4.01 kcal
Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal
Total: -61.37 6.58 -54.78 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260805993.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.786 kcal
(2) G-P(sol) polarization free energy of solvation -61.366 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.419 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.585 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.782 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.004 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds