Wall clock time and date at job start Mon Mar 30 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99890 * 2 1 4 4 H 1.48500 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47425 * 300.00230 * 3 2 1 6 6 H 1.48497 * 109.46865 * 60.00368 * 3 2 1 7 7 C 1.37877 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99686 * 180.27368 * 7 2 1 9 9 C 1.50692 * 120.00439 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47496 * 180.02562 * 9 7 2 11 11 O 1.21315 * 119.99927 * 0.02562 * 10 9 7 12 12 C 1.46666 * 120.00221 * 180.02562 * 10 9 7 13 13 C 1.40163 * 120.21414 * 5.79920 * 12 10 9 14 14 C 1.37567 * 119.98857 * 179.73929 * 13 12 10 15 15 C 1.38715 * 120.43405 * 0.51566 * 14 13 12 16 16 C 1.38283 * 120.43920 * 359.76227 * 15 14 13 17 17 O 1.36017 * 120.00495 * 180.02562 * 16 15 14 18 18 C 1.39425 * 119.99946 * 359.97438 * 16 15 14 19 19 N 1.38925 * 120.21621 * 179.97438 * 18 16 15 20 20 H 0.97004 * 119.99729 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.47312 * 300.00816 * 9 7 2 22 22 H 1.09006 * 109.47312 * 59.99932 * 9 7 2 23 23 H 1.08009 * 120.00676 * 359.97438 * 13 12 10 24 24 H 1.08002 * 119.78169 * 180.22891 * 14 13 12 25 25 H 1.08003 * 119.77925 * 179.74105 * 15 14 13 26 26 H 0.96703 * 113.99307 * 269.97627 * 17 16 15 27 27 H 0.97004 * 119.99707 * 203.05732 * 19 18 16 28 28 H 0.96994 * 120.00219 * 23.05153 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 0.0039 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 8 3.4231 -3.4229 -0.0001 12 6 1.7415 -5.0274 -0.0011 13 6 0.3703 -5.2907 -0.1240 14 6 -0.0826 -6.5897 -0.1294 15 6 0.8086 -7.6451 -0.0030 16 6 2.1645 -7.4056 0.1251 17 8 3.0305 -8.4472 0.2479 18 6 2.6440 -6.0964 0.1273 19 7 4.0052 -5.8506 0.2563 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5571 0.8896 22 1 0.6241 -2.5567 -0.8903 23 1 -0.3302 -4.4740 -0.2183 24 1 -1.1395 -6.7888 -0.2280 25 1 0.4410 -8.6606 -0.0044 26 1 3.1929 -8.7179 1.1620 27 1 4.3139 -4.9929 0.5881 28 1 4.6470 -6.5366 0.0146 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260813989.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:28 Heat of formation + Delta-G solvation = -59.350856 kcal Electronic energy + Delta-G solvation = -14376.208903 eV Core-core repulsion = 11778.167391 eV Total energy + Delta-G solvation = -2598.041512 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.95148 -38.05688 -36.12226 -34.20084 -32.92146 -30.67777 -28.50337 -28.11700 -24.38348 -22.79246 -21.61205 -19.44734 -17.76883 -16.77082 -16.59563 -16.33279 -15.39132 -14.84777 -14.33666 -14.23224 -13.96773 -13.75758 -13.34465 -12.21628 -12.16907 -11.92552 -11.46334 -11.19150 -10.79441 -10.72566 -10.65032 -10.31647 -10.01509 -9.25388 -8.54569 -8.45080 -8.43351 -7.32694 -6.06771 -4.07059 1.12988 1.70509 3.12927 3.31572 3.38908 3.46380 4.07037 4.20026 4.34803 4.45546 4.96738 5.27048 5.31285 5.34241 5.58459 5.89407 5.97292 6.27871 6.49624 6.70050 6.72882 6.97564 7.22348 7.34483 7.52456 7.87184 7.92982 8.12156 8.22131 8.69326 9.02365 9.57861 11.05373 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.051080 B = 0.006878 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.023496 B = 4070.034024 C = 4595.830373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.073 0.927 9 C -0.020 4.020 10 C 0.401 3.599 11 O -0.475 6.475 12 C -0.228 4.228 13 C -0.028 4.028 14 C -0.182 4.182 15 C -0.078 4.078 16 C 0.000 4.000 17 O -0.494 6.494 18 C 0.243 3.757 19 N -0.856 5.856 20 H 0.261 0.739 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.139 0.861 24 H 0.125 0.875 25 H 0.124 0.876 26 H 0.376 0.624 27 H 0.413 0.587 28 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 -14.137 1.836 14.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.091 0.909 9 C -0.057 4.057 10 C 0.283 3.717 11 O -0.353 6.353 12 C -0.235 4.235 13 C -0.047 4.047 14 C -0.202 4.202 15 C -0.097 4.097 16 C -0.048 4.048 17 O -0.302 6.302 18 C 0.133 3.867 19 N -0.402 5.402 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.157 0.843 24 H 0.143 0.857 25 H 0.142 0.858 26 H 0.230 0.770 27 H 0.251 0.749 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.567 -13.818 1.226 13.961 hybrid contribution 0.549 0.775 0.530 1.088 sum 2.116 -13.043 1.757 13.329 Atomic orbital electron populations 1.69965 1.06019 1.26781 1.51056 1.25001 0.94888 0.99432 0.95152 0.86426 0.80281 0.83208 0.77505 1.19578 1.20988 1.21015 1.21221 0.94164 0.89587 1.50339 0.90919 1.19518 0.94993 0.91572 0.99599 1.23099 0.90576 0.88802 0.69250 1.90148 1.19548 1.86891 1.38688 1.20641 0.94097 0.95150 1.13577 1.21467 0.94128 0.97235 0.91821 1.20744 0.99485 0.92082 1.07858 1.21278 0.91699 0.99564 0.97190 1.17923 0.88900 0.85193 1.12818 1.84895 1.64458 1.49277 1.31572 1.18373 0.85546 0.91852 0.90903 1.42823 1.02988 1.21524 1.72862 0.92942 0.92781 0.92786 0.84277 0.85664 0.85757 0.77050 0.74881 0.77732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 13.29 55.43 0.74 -25.43 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 15 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 7 C -0.52 -14.73 8.92 -34.44 -0.31 -15.04 15 8 H 0.07 2.14 6.75 -52.48 -0.35 1.79 15 9 C -0.02 -0.51 4.14 -29.04 -0.12 -0.63 15 10 C 0.40 9.02 7.07 -30.91 -0.22 8.80 15 11 O -0.48 -11.37 12.91 5.53 0.07 -11.30 15 12 C -0.23 -4.27 5.88 -104.92 -0.62 -4.88 15 13 C -0.03 -0.45 9.46 -39.10 -0.37 -0.82 15 14 C -0.18 -2.46 10.01 -39.65 -0.40 -2.85 15 15 C -0.08 -1.02 9.96 -39.39 -0.39 -1.41 15 16 C 0.00 0.00 6.71 -39.12 -0.26 -0.26 15 17 O -0.49 -6.02 12.89 -19.79 -0.26 -6.28 15 18 C 0.24 4.10 6.78 -83.36 -0.57 3.53 15 19 N -0.86 -13.39 8.45 32.68 0.28 -13.11 15 20 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 21 H 0.05 1.38 8.14 -51.93 -0.42 0.95 15 22 H 0.05 1.38 7.91 -51.93 -0.41 0.97 15 23 H 0.14 2.21 6.99 -52.48 -0.37 1.85 15 24 H 0.13 1.35 8.06 -52.49 -0.42 0.93 15 25 H 0.12 1.30 8.06 -52.48 -0.42 0.87 15 26 H 0.38 2.94 9.06 45.56 0.41 3.35 15 27 H 0.41 7.11 6.06 -40.82 -0.25 6.86 15 28 H 0.39 5.17 8.42 -40.82 -0.34 4.82 15 LS Contribution 250.55 15.07 3.78 3.78 Total: -1.00 -31.85 250.55 -5.48 -37.33 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -1.71 Total: 10.19 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -3.35 Total: -12.07 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 1.01 Total: -38.54 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.18 Total: -17.58 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.85 -5.48 -37.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260813989.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.025 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds