Wall clock time and date at job start Mon Mar 30 2020 02:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36568 * 125.62783 * 2 1 4 4 C 1.34345 * 109.10426 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.11404 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46869 * 265.02001 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 C 1.41850 * 107.76657 * 0.23960 * 4 3 2 15 15 S 1.75945 * 142.79573 * 180.56370 * 14 4 3 16 16 C 1.75620 * 91.29821 * 179.35417 * 15 14 4 17 17 C 1.32577 * 110.39542 * 359.81388 * 16 15 14 18 18 C 1.37534 * 107.55861 * 359.60479 * 14 4 3 19 19 H 1.08997 * 109.47159 * 90.02932 * 1 2 3 20 20 H 1.09003 * 109.47123 * 210.02812 * 1 2 3 21 21 H 1.08996 * 109.46858 * 330.02425 * 1 2 3 22 22 H 1.07999 * 125.45092 * 359.95758 * 3 2 1 23 23 H 1.09004 * 109.47210 * 145.02294 * 5 4 3 24 24 H 1.08994 * 109.47551 * 25.01946 * 5 4 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 26 26 H 1.07994 * 124.80235 * 179.83670 * 16 15 14 27 27 H 1.07997 * 122.20023 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2606 1.1100 0.0000 4 6 3.5485 0.7280 0.0006 5 6 4.7463 1.6425 0.0002 6 6 5.2207 1.8483 -1.4153 7 1 4.7061 1.3655 -2.2329 8 6 6.3080 2.6580 -1.6672 9 7 6.9344 3.2461 -0.6716 10 14 6.8913 2.9192 -3.4224 11 1 6.0231 2.1526 -4.3518 12 1 6.8204 4.3641 -3.7577 13 1 8.2938 2.4490 -3.5532 14 6 3.5793 -0.6902 -0.0047 15 16 4.6733 -2.0682 0.0023 16 6 3.3229 -3.1910 0.0023 17 6 2.1731 -2.5309 0.0013 18 6 2.2774 -1.1335 0.0007 19 1 -0.3633 -0.0005 -1.0276 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3633 0.8902 0.5134 22 1 1.9104 2.1317 -0.0007 23 1 5.5460 1.1941 0.5898 24 1 4.4700 2.6034 0.4341 25 1 7.6996 3.8155 -0.8487 26 1 3.4159 -4.2669 0.0033 27 1 1.2190 -3.0369 0.0008 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260820961.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:37 Heat of formation + Delta-G solvation = 48.448464 kcal Electronic energy + Delta-G solvation = -12367.466509 eV Core-core repulsion = 10216.852398 eV Total energy + Delta-G solvation = -2150.614112 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.00594 -36.34276 -35.55892 -33.73042 -30.48439 -28.34350 -26.87680 -24.86063 -23.32872 -21.20557 -19.92555 -18.52406 -17.99845 -16.46557 -16.16020 -15.93779 -15.63837 -15.04387 -14.42485 -14.09610 -13.95783 -13.64661 -13.20923 -12.93525 -12.85293 -12.48999 -12.31337 -12.04391 -11.68948 -11.46066 -11.44851 -10.58318 -10.06200 -8.82284 -8.38248 -8.05857 -6.28814 0.28372 0.83427 1.37841 1.39185 1.42688 1.52503 1.86067 2.01868 2.09999 2.44433 3.13184 3.89992 4.10468 4.27605 4.39176 4.49791 4.66033 4.72155 4.92948 4.96964 5.18502 5.32714 5.37706 5.74659 5.78602 5.82808 6.22651 6.27814 6.58359 6.83165 7.39190 8.93081 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.031147 B = 0.008973 C = 0.007777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.735728 B = 3119.690633 C = 3599.692212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.454 5.454 3 C 0.022 3.978 4 C -0.131 4.131 5 C 0.093 3.907 6 C -0.520 4.520 7 H 0.046 0.954 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.269 1.269 12 H -0.272 1.272 13 H -0.276 1.276 14 C -0.233 4.233 15 S 0.067 5.933 16 C -0.192 4.192 17 C -0.108 4.108 18 C 0.019 3.981 19 H 0.078 0.922 20 H 0.098 0.902 21 H 0.100 0.900 22 H 0.186 0.814 23 H -0.013 1.013 24 H 0.006 0.994 25 H 0.265 0.735 26 H 0.205 0.795 27 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 -10.562 1.039 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.135 5.135 3 C -0.108 4.108 4 C -0.141 4.141 5 C 0.055 3.945 6 C -0.558 4.558 7 H 0.064 0.936 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.193 1.193 12 H -0.197 1.197 13 H -0.202 1.202 14 C -0.354 4.354 15 S 0.326 5.674 16 C -0.327 4.327 17 C -0.141 4.141 18 C -0.096 4.096 19 H 0.097 0.903 20 H 0.117 0.883 21 H 0.119 0.881 22 H 0.203 0.797 23 H 0.005 0.995 24 H 0.024 0.976 25 H 0.074 0.926 26 H 0.222 0.778 27 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.070 -10.632 1.084 16.121 hybrid contribution -0.651 0.822 -0.668 1.243 sum -12.720 -9.811 0.417 16.070 Atomic orbital electron populations 1.22253 0.74277 1.05813 1.04086 1.44133 1.06817 1.02616 1.59936 1.21703 0.88745 0.92021 1.08292 1.19374 0.95603 0.91060 1.08017 1.17387 0.89515 0.91910 0.95679 1.21395 1.13355 1.28035 0.93028 0.93567 1.25906 0.96479 0.95331 1.01638 1.70094 1.21731 1.32382 1.33034 0.85428 0.78155 0.78202 0.79463 1.19293 1.19712 1.20199 1.22980 0.96824 0.98346 1.17248 1.83952 1.09684 0.95032 1.78753 1.25477 0.93661 1.04031 1.09571 1.19099 1.00795 0.88063 1.06115 1.18794 0.88290 0.90257 1.12262 0.90311 0.88337 0.88095 0.79691 0.99453 0.97590 0.92637 0.77808 0.81180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.44 11.15 127.77 1.42 2.86 15 2 N -0.45 -14.77 3.23 -539.79 -1.75 -16.51 15 3 C 0.02 0.88 11.28 83.07 0.94 1.82 15 4 C -0.13 -6.37 5.33 -19.86 -0.11 -6.48 15 5 C 0.09 5.37 5.47 29.10 0.16 5.53 15 6 C -0.52 -31.64 9.09 25.60 0.23 -31.40 15 7 H 0.05 2.83 7.74 -2.91 -0.02 2.80 15 8 C 0.00 0.24 5.46 84.66 0.46 0.70 15 9 N -0.93 -58.35 13.29 21.45 0.28 -58.06 15 10 Si 0.96 46.26 29.54 68.60 2.03 48.29 15 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 15 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 15 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 14 C -0.23 -10.40 7.26 23.00 0.17 -10.23 15 15 S 0.07 2.57 23.31 -56.49 -1.32 1.26 15 16 C -0.19 -5.26 11.13 66.67 0.74 -4.52 15 17 C -0.11 -2.99 10.17 21.58 0.22 -2.77 15 18 C 0.02 0.67 7.25 38.22 0.28 0.95 15 19 H 0.08 1.31 8.14 -2.39 -0.02 1.29 15 20 H 0.10 1.42 8.14 -2.39 -0.02 1.41 15 21 H 0.10 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.19 6.26 8.06 -2.91 -0.02 6.24 15 23 H -0.01 -0.82 8.14 -2.38 -0.02 -0.83 15 24 H 0.01 0.35 8.14 -2.39 -0.02 0.33 15 25 H 0.26 15.42 8.31 -92.70 -0.77 14.65 15 26 H 0.21 3.70 8.06 -2.91 -0.02 3.67 15 27 H 0.17 3.20 8.06 -2.91 -0.02 3.18 15 Total: -1.00 -75.07 255.20 4.92 -70.15 By element: Atomic # 1 Polarization: -2.73 SS G_CDS: 1.16 Total: -1.57 kcal Atomic # 6 Polarization: -48.07 SS G_CDS: 4.51 Total: -43.55 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -1.46 Total: -74.58 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.32 Total: 1.26 kcal Total: -75.07 4.92 -70.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260820961.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.597 kcal (2) G-P(sol) polarization free energy of solvation -75.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds