Wall clock time and date at job start Mon Mar 30 2020 02:54:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36568 * 125.62783 * 2 1
4 4 C 1.34345 * 109.10426 * 179.97438 * 3 2 1
5 5 C 1.50700 * 126.11404 * 179.97438 * 4 3 2
6 6 C 1.50702 * 109.46869 * 265.02001 * 5 4 3
7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4
8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4
9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5
10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5
11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6
12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6
13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6
14 14 C 1.41850 * 107.76657 * 0.23960 * 4 3 2
15 15 S 1.75945 * 142.79573 * 180.56370 * 14 4 3
16 16 C 1.75620 * 91.29821 * 179.35417 * 15 14 4
17 17 C 1.32577 * 110.39542 * 359.81388 * 16 15 14
18 18 C 1.37534 * 107.55861 * 359.60479 * 14 4 3
19 19 H 1.08997 * 109.47159 * 90.02932 * 1 2 3
20 20 H 1.09003 * 109.47123 * 210.02812 * 1 2 3
21 21 H 1.08996 * 109.46858 * 330.02425 * 1 2 3
22 22 H 1.07999 * 125.45092 * 359.95758 * 3 2 1
23 23 H 1.09004 * 109.47210 * 145.02294 * 5 4 3
24 24 H 1.08994 * 109.47551 * 25.01946 * 5 4 3
25 25 H 0.97005 * 119.99651 * 179.97438 * 9 8 6
26 26 H 1.07994 * 124.80235 * 179.83670 * 16 15 14
27 27 H 1.07997 * 122.20023 * 179.97438 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2606 1.1100 0.0000
4 6 3.5485 0.7280 0.0006
5 6 4.7463 1.6425 0.0002
6 6 5.2207 1.8483 -1.4153
7 1 4.7061 1.3655 -2.2329
8 6 6.3080 2.6580 -1.6672
9 7 6.9344 3.2461 -0.6716
10 14 6.8913 2.9192 -3.4224
11 1 6.0231 2.1526 -4.3518
12 1 6.8204 4.3641 -3.7577
13 1 8.2938 2.4490 -3.5532
14 6 3.5793 -0.6902 -0.0047
15 16 4.6733 -2.0682 0.0023
16 6 3.3229 -3.1910 0.0023
17 6 2.1731 -2.5309 0.0013
18 6 2.2774 -1.1335 0.0007
19 1 -0.3633 -0.0005 -1.0276
20 1 -0.3633 -0.8898 0.5143
21 1 -0.3633 0.8902 0.5134
22 1 1.9104 2.1317 -0.0007
23 1 5.5460 1.1941 0.5898
24 1 4.4700 2.6034 0.4341
25 1 7.6996 3.8155 -0.8487
26 1 3.4159 -4.2669 0.0033
27 1 1.2190 -3.0369 0.0008
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260820961.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:54:37
Heat of formation + Delta-G solvation = 48.448464 kcal
Electronic energy + Delta-G solvation = -12367.466509 eV
Core-core repulsion = 10216.852398 eV
Total energy + Delta-G solvation = -2150.614112 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 221.057 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-42.00594 -36.34276 -35.55892 -33.73042 -30.48439 -28.34350 -26.87680 -24.86063
-23.32872 -21.20557 -19.92555 -18.52406 -17.99845 -16.46557 -16.16020 -15.93779
-15.63837 -15.04387 -14.42485 -14.09610 -13.95783 -13.64661 -13.20923 -12.93525
-12.85293 -12.48999 -12.31337 -12.04391 -11.68948 -11.46066 -11.44851 -10.58318
-10.06200 -8.82284 -8.38248 -8.05857 -6.28814 0.28372 0.83427 1.37841
1.39185 1.42688 1.52503 1.86067 2.01868 2.09999 2.44433 3.13184
3.89992 4.10468 4.27605 4.39176 4.49791 4.66033 4.72155 4.92948
4.96964 5.18502 5.32714 5.37706 5.74659 5.78602 5.82808 6.22651
6.27814 6.58359 6.83165 7.39190 8.93081
Molecular weight = 221.06amu
Principal moments of inertia in cm(-1)
A = 0.031147 B = 0.008973 C = 0.007777
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 898.735728 B = 3119.690633 C = 3599.692212
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.076 3.924
2 N -0.454 5.454
3 C 0.022 3.978
4 C -0.131 4.131
5 C 0.093 3.907
6 C -0.520 4.520
7 H 0.046 0.954
8 C 0.004 3.996
9 N -0.932 5.932
10 Si 0.963 3.037
11 H -0.269 1.269
12 H -0.272 1.272
13 H -0.276 1.276
14 C -0.233 4.233
15 S 0.067 5.933
16 C -0.192 4.192
17 C -0.108 4.108
18 C 0.019 3.981
19 H 0.078 0.922
20 H 0.098 0.902
21 H 0.100 0.900
22 H 0.186 0.814
23 H -0.013 1.013
24 H 0.006 0.994
25 H 0.265 0.735
26 H 0.205 0.795
27 H 0.171 0.829
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.333 -10.562 1.039 17.042
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 N -0.135 5.135
3 C -0.108 4.108
4 C -0.141 4.141
5 C 0.055 3.945
6 C -0.558 4.558
7 H 0.064 0.936
8 C -0.194 4.194
9 N -0.572 5.572
10 Si 0.788 3.212
11 H -0.193 1.193
12 H -0.197 1.197
13 H -0.202 1.202
14 C -0.354 4.354
15 S 0.326 5.674
16 C -0.327 4.327
17 C -0.141 4.141
18 C -0.096 4.096
19 H 0.097 0.903
20 H 0.117 0.883
21 H 0.119 0.881
22 H 0.203 0.797
23 H 0.005 0.995
24 H 0.024 0.976
25 H 0.074 0.926
26 H 0.222 0.778
27 H 0.188 0.812
Dipole moment (debyes) X Y Z Total
from point charges -12.070 -10.632 1.084 16.121
hybrid contribution -0.651 0.822 -0.668 1.243
sum -12.720 -9.811 0.417 16.070
Atomic orbital electron populations
1.22253 0.74277 1.05813 1.04086 1.44133 1.06817 1.02616 1.59936
1.21703 0.88745 0.92021 1.08292 1.19374 0.95603 0.91060 1.08017
1.17387 0.89515 0.91910 0.95679 1.21395 1.13355 1.28035 0.93028
0.93567 1.25906 0.96479 0.95331 1.01638 1.70094 1.21731 1.32382
1.33034 0.85428 0.78155 0.78202 0.79463 1.19293 1.19712 1.20199
1.22980 0.96824 0.98346 1.17248 1.83952 1.09684 0.95032 1.78753
1.25477 0.93661 1.04031 1.09571 1.19099 1.00795 0.88063 1.06115
1.18794 0.88290 0.90257 1.12262 0.90311 0.88337 0.88095 0.79691
0.99453 0.97590 0.92637 0.77808 0.81180
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.44 11.15 127.77 1.42 2.86 15
2 N -0.45 -14.77 3.23 -539.79 -1.75 -16.51 15
3 C 0.02 0.88 11.28 83.07 0.94 1.82 15
4 C -0.13 -6.37 5.33 -19.86 -0.11 -6.48 15
5 C 0.09 5.37 5.47 29.10 0.16 5.53 15
6 C -0.52 -31.64 9.09 25.60 0.23 -31.40 15
7 H 0.05 2.83 7.74 -2.91 -0.02 2.80 15
8 C 0.00 0.24 5.46 84.66 0.46 0.70 15
9 N -0.93 -58.35 13.29 21.45 0.28 -58.06 15
10 Si 0.96 46.26 29.54 68.60 2.03 48.29 15
11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 15
12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 15
13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15
14 C -0.23 -10.40 7.26 23.00 0.17 -10.23 15
15 S 0.07 2.57 23.31 -56.49 -1.32 1.26 15
16 C -0.19 -5.26 11.13 66.67 0.74 -4.52 15
17 C -0.11 -2.99 10.17 21.58 0.22 -2.77 15
18 C 0.02 0.67 7.25 38.22 0.28 0.95 15
19 H 0.08 1.31 8.14 -2.39 -0.02 1.29 15
20 H 0.10 1.42 8.14 -2.39 -0.02 1.41 15
21 H 0.10 1.51 8.14 -2.39 -0.02 1.49 15
22 H 0.19 6.26 8.06 -2.91 -0.02 6.24 15
23 H -0.01 -0.82 8.14 -2.38 -0.02 -0.83 15
24 H 0.01 0.35 8.14 -2.39 -0.02 0.33 15
25 H 0.26 15.42 8.31 -92.70 -0.77 14.65 15
26 H 0.21 3.70 8.06 -2.91 -0.02 3.67 15
27 H 0.17 3.20 8.06 -2.91 -0.02 3.18 15
Total: -1.00 -75.07 255.20 4.92 -70.15
By element:
Atomic # 1 Polarization: -2.73 SS G_CDS: 1.16 Total: -1.57 kcal
Atomic # 6 Polarization: -48.07 SS G_CDS: 4.51 Total: -43.55 kcal
Atomic # 7 Polarization: -73.12 SS G_CDS: -1.46 Total: -74.58 kcal
Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal
Atomic # 16 Polarization: 2.57 SS G_CDS: -1.32 Total: 1.26 kcal
Total: -75.07 4.92 -70.15 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260820961.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.597 kcal
(2) G-P(sol) polarization free energy of solvation -75.073 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.525 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.448 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds