Wall clock time and date at job start Mon Mar 30 2020 02:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29552 * 125.30478 * 2 1 4 4 N 1.40109 * 107.70880 * 179.97438 * 3 2 1 5 5 C 1.35175 * 106.96472 * 359.97438 * 4 3 2 6 6 N 1.31968 * 121.28804 * 179.97438 * 5 4 3 7 7 C 1.33775 * 121.64339 * 0.02562 * 6 5 4 8 8 O 1.22298 * 120.11197 * 180.02562 * 7 6 5 9 9 C 1.41417 * 119.78226 * 359.76306 * 7 6 5 10 10 C 1.38130 * 132.52594 * 180.02562 * 4 3 2 11 11 C 1.40350 * 120.72952 * 359.97438 * 10 4 3 12 12 H 1.08002 * 119.99625 * 330.88234 * 11 10 4 13 13 C 1.40471 * 120.00129 * 151.15027 * 11 10 4 14 14 N 1.30512 * 120.00026 * 161.22852 * 13 11 10 15 15 Si 1.86803 * 120.00056 * 341.23564 * 13 11 10 16 16 H 1.48497 * 109.47455 * 95.36930 * 15 13 11 17 17 H 1.48500 * 109.47035 * 215.36915 * 15 13 11 18 18 H 1.48501 * 109.46946 * 335.37080 * 15 13 11 19 19 O 1.34466 * 125.30396 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.47400 * 89.99775 * 1 2 3 21 21 H 1.08997 * 109.47398 * 210.00117 * 1 2 3 22 22 H 1.09003 * 109.47068 * 329.99861 * 1 2 3 23 23 H 1.07995 * 120.88176 * 180.27977 * 9 7 6 24 24 H 0.97008 * 120.00210 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2557 1.0573 0.0000 4 7 3.5913 0.6337 0.0006 5 6 3.5764 -0.7180 0.0015 6 7 4.6965 -1.4157 0.0017 7 6 5.8944 -0.8201 0.0016 8 8 6.9148 -1.4942 0.0013 9 6 5.9769 0.5916 -0.0039 10 6 4.7890 1.3218 0.0013 11 6 4.8098 2.7252 0.0010 12 1 4.0011 3.2771 -0.4548 13 6 5.8852 3.4118 0.5886 14 7 6.1059 4.6616 0.2844 15 14 6.9997 2.5358 1.8053 16 1 8.1938 2.0123 1.0946 17 1 7.4296 3.4903 2.8586 18 1 6.2617 1.4087 2.4298 19 8 2.2841 -1.0974 0.0005 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 6.9345 1.0909 -0.0086 24 1 6.8487 5.1357 0.6899 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260823363.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:26 Heat of formation + Delta-G solvation = 45.864703 kcal Electronic energy + Delta-G solvation = -14664.987957 eV Core-core repulsion = 11967.968591 eV Total energy + Delta-G solvation = -2697.019366 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.34571 -38.94098 -36.34952 -34.70062 -34.38872 -32.01220 -31.49482 -28.08763 -26.53913 -24.15566 -22.06280 -21.82812 -18.84410 -18.18364 -17.39895 -17.24033 -15.67006 -15.31366 -14.66264 -14.06303 -13.75054 -13.64498 -13.24510 -13.12155 -12.77976 -12.60892 -12.15676 -11.75679 -11.30474 -11.08803 -10.73493 -10.25364 -9.95050 -9.71316 -8.88433 -8.06445 -7.53117 -7.49536 -5.31901 1.47867 1.83581 1.84496 2.41392 2.48941 3.03412 3.05055 3.18574 3.77681 4.14598 4.29630 4.65881 5.05325 5.09097 5.15256 5.26303 5.61570 5.81602 6.13930 6.48766 6.58995 6.86333 7.33039 7.39977 7.66852 7.91109 8.17871 8.76005 9.36990 9.45383 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.028574 B = 0.012814 C = 0.009409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.676045 B = 2184.509737 C = 2975.054861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.229 3.771 3 N -0.253 5.253 4 N -0.377 5.377 5 C 0.512 3.488 6 N -0.580 5.580 7 C 0.534 3.466 8 O -0.567 6.567 9 C -0.463 4.463 10 C 0.309 3.691 11 C -0.406 4.406 12 H 0.111 0.889 13 C 0.095 3.905 14 N -0.758 5.758 15 Si 0.924 3.076 16 H -0.255 1.255 17 H -0.284 1.284 18 H -0.244 1.244 19 O -0.227 6.227 20 H 0.104 0.896 21 H 0.100 0.900 22 H 0.110 0.890 23 H 0.142 0.858 24 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 -0.640 1.401 11.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.003 3.997 3 N -0.079 5.079 4 N -0.177 5.177 5 C 0.208 3.792 6 N -0.343 5.343 7 C 0.338 3.662 8 O -0.454 6.454 9 C -0.491 4.491 10 C 0.211 3.789 11 C -0.435 4.435 12 H 0.128 0.872 13 C -0.133 4.133 14 N -0.379 5.379 15 Si 0.748 3.252 16 H -0.180 1.180 17 H -0.211 1.211 18 H -0.167 1.167 19 O -0.113 6.113 20 H 0.122 0.878 21 H 0.119 0.881 22 H 0.128 0.872 23 H 0.159 0.841 24 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.789 -0.637 1.380 10.896 hybrid contribution 0.420 0.058 0.315 0.528 sum -10.369 -0.579 1.695 10.522 Atomic orbital electron populations 1.20486 0.79165 1.06176 1.05757 1.27085 0.97119 0.78652 0.96861 1.77273 0.87842 1.21676 1.21136 1.47611 1.03521 1.05752 1.60857 1.21882 0.85537 0.80289 0.91498 1.68355 0.95376 1.37805 1.32732 1.16869 0.83928 0.87707 0.77745 1.90757 1.32294 1.68340 1.53965 1.22440 0.95655 0.94734 1.36303 1.17954 0.77545 0.92276 0.91108 1.19281 1.06552 0.88106 1.29551 0.87163 1.26215 0.96102 0.94826 0.96152 1.69442 1.25360 1.10442 1.32628 0.85992 0.80719 0.79256 0.79204 1.17967 1.21149 1.16708 1.84672 1.13278 1.33923 1.79423 0.87774 0.88093 0.87170 0.84059 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.01 0.38 -0.02 14 2 C 0.23 3.30 8.36 -13.24 -0.11 3.19 14 3 N -0.25 -4.75 12.51 32.46 0.41 -4.34 14 4 N -0.38 -8.68 3.91 -11.99 -0.05 -8.73 14 5 C 0.51 11.63 9.18 -89.02 -0.82 10.82 14 6 N -0.58 -15.21 10.45 -16.39 -0.17 -15.38 14 7 C 0.53 15.20 7.71 -15.50 -0.12 15.08 14 8 O -0.57 -17.51 17.98 4.64 0.08 -17.43 14 9 C -0.46 -12.48 7.28 -37.93 -0.28 -12.76 14 10 C 0.31 7.84 6.04 -83.78 -0.51 7.33 14 11 C -0.41 -10.17 9.68 -37.95 -0.37 -10.54 14 12 H 0.11 2.82 8.06 -52.49 -0.42 2.40 14 13 C 0.10 2.29 5.41 -17.27 -0.09 2.20 14 14 N -0.76 -17.96 13.91 55.57 0.77 -17.19 14 15 Si 0.92 20.60 24.55 -169.99 -4.17 16.43 14 16 H -0.25 -5.80 6.71 56.52 0.38 -5.42 14 17 H -0.28 -5.84 7.11 56.52 0.40 -5.43 14 18 H -0.24 -5.83 6.88 56.52 0.39 -5.44 14 19 O -0.23 -4.03 10.71 4.22 0.05 -3.99 14 20 H 0.10 0.51 8.14 -51.93 -0.42 0.09 14 21 H 0.10 0.48 8.14 -51.93 -0.42 0.05 14 22 H 0.11 0.60 8.14 -51.93 -0.42 0.18 14 23 H 0.14 3.79 4.75 -52.49 -0.25 3.55 14 24 H 0.30 6.34 8.29 -40.82 -0.34 6.00 14 LS Contribution 224.41 15.07 3.38 3.38 Total: -1.00 -33.24 224.41 -2.72 -35.96 By element: Atomic # 1 Polarization: -2.91 SS G_CDS: -1.11 Total: -4.02 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: -1.91 Total: 15.31 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.96 Total: -45.63 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.13 Total: -21.42 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.17 Total: 16.43 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -33.24 -2.72 -35.96 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260823363.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.823 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds