Wall clock time and date at job start Mon Mar 30 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.35054 * 125.29236 * 90.00051 * 10 9 7 12 12 O 1.21655 * 126.98809 * 359.93916 * 11 10 9 13 13 C 1.46395 * 106.01465 * 179.97438 * 11 10 9 14 14 C 1.35908 * 147.49835 * 180.02562 * 13 11 10 15 15 N 1.33639 * 107.96488 * 179.97438 * 14 13 11 16 16 C 1.30816 * 109.81103 * 359.97253 * 15 14 13 17 17 N 1.35855 * 109.00168 * 0.02562 * 16 15 14 18 18 C 1.34281 * 145.71529 * 180.39169 * 17 16 15 19 19 O 1.21458 * 124.49858 * 359.84070 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07996 * 126.01665 * 359.96624 * 14 13 11 24 24 H 1.08004 * 125.49487 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.7098 -4.2107 1.0895 12 8 2.4698 -3.9337 2.2496 13 6 3.6073 -5.2593 0.6016 14 6 4.4664 -6.2668 0.9081 15 7 4.9157 -6.7882 -0.2374 16 6 4.3806 -6.1581 -1.2513 17 7 3.5518 -5.1891 -0.7825 18 6 2.7026 -4.2016 -1.1095 19 8 2.4253 -3.8816 -2.2479 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 4.7383 -6.5891 1.9023 24 1 4.5675 -6.3736 -2.2930 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260838204.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:12 Heat of formation + Delta-G solvation = 22.389621 kcal Electronic energy + Delta-G solvation = -14533.812415 eV Core-core repulsion = 11835.775093 eV Total energy + Delta-G solvation = -2698.037322 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.17623 -41.41117 -39.91890 -37.32675 -35.71444 -34.22541 -31.37486 -29.64344 -26.49067 -26.03789 -23.25278 -22.84724 -21.81318 -19.27116 -18.77064 -18.24988 -18.04766 -17.28186 -16.48985 -16.08631 -15.69188 -15.43181 -15.30384 -14.86388 -14.46770 -13.84690 -13.29187 -12.87144 -12.75107 -12.40710 -12.10437 -11.97543 -11.74510 -11.50735 -10.82321 -10.77726 -10.19020 -8.40393 -6.56458 -0.97189 0.61404 1.18685 1.36259 1.37242 1.40121 1.48422 1.68265 1.98689 2.31145 2.76312 2.94100 3.22993 3.48719 3.97844 4.35034 4.37072 4.51971 4.85144 4.97407 5.39342 5.47900 5.64592 5.71639 6.01951 6.30176 6.42958 6.56654 7.14488 8.69302 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.043693 B = 0.008459 C = 0.008035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.686719 B = 3309.281069 C = 3483.737133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.020 3.980 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.566 4.566 8 H 0.055 0.945 9 C 0.266 3.734 10 N -0.566 5.566 11 C 0.593 3.407 12 O -0.483 6.483 13 C -0.167 4.167 14 C 0.159 3.841 15 N -0.489 5.489 16 C 0.331 3.669 17 N -0.489 5.489 18 C 0.728 3.272 19 O -0.505 6.505 20 H 0.275 0.725 21 H 0.043 0.957 22 H 0.040 0.960 23 H 0.233 0.767 24 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.613 -11.338 -1.029 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.604 4.604 8 H 0.073 0.927 9 C 0.148 3.852 10 N -0.309 5.309 11 C 0.383 3.617 12 O -0.355 6.355 13 C -0.275 4.275 14 C 0.013 3.987 15 N -0.206 5.206 16 C 0.054 3.946 17 N -0.198 5.198 18 C 0.431 3.569 19 O -0.374 6.374 20 H 0.084 0.916 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.249 0.751 24 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 8.568 -11.386 -1.306 14.309 hybrid contribution -0.670 1.728 -0.015 1.854 sum 7.897 -9.658 -1.321 12.546 Atomic orbital electron populations 1.70004 1.07429 1.29049 1.48988 1.25815 0.95936 1.03041 0.93396 0.85304 0.78446 0.77692 0.78777 1.19371 1.19547 1.19336 1.21473 0.93381 0.91249 1.54274 0.92669 1.19286 0.86361 0.80832 0.98708 1.47100 1.43651 1.33887 1.06249 1.17547 0.79103 0.80465 0.84542 1.90818 1.60570 1.66344 1.17768 1.22528 1.12747 1.08354 0.83840 1.22929 0.88358 0.87472 0.99979 1.70858 1.25349 1.26884 0.97544 1.26766 0.83911 0.81030 1.02935 1.45279 1.35716 1.28196 1.10594 1.15666 0.78000 0.78251 0.84961 1.90954 1.61235 1.65294 1.19942 0.91618 0.93920 0.94208 0.75057 0.71216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.02 13.29 21.45 0.28 -52.74 14 2 C 0.02 1.09 5.46 84.66 0.46 1.55 14 3 Si 0.97 43.55 29.54 68.60 2.03 45.58 14 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 14 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 14 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 14 7 C -0.57 -32.09 9.39 25.60 0.24 -31.85 14 8 H 0.06 3.13 7.81 -2.91 -0.02 3.10 14 9 C 0.27 14.10 5.59 85.64 0.48 14.58 14 10 N -0.57 -25.40 2.64 -782.18 -2.06 -27.46 14 11 C 0.59 24.16 8.14 86.32 0.70 24.87 14 12 O -0.48 -21.96 17.87 -4.21 -0.08 -22.03 14 13 C -0.17 -5.09 7.75 39.64 0.31 -4.78 14 14 C 0.16 3.44 11.91 83.88 1.00 4.44 14 15 N -0.49 -10.12 11.20 -198.91 -2.23 -12.35 14 16 C 0.33 6.68 13.06 179.91 2.35 9.03 14 17 N -0.49 -14.79 3.40 -479.79 -1.63 -16.42 14 18 C 0.73 29.10 8.70 179.34 1.56 30.66 14 19 O -0.51 -22.44 17.64 -3.58 -0.06 -22.50 14 20 H 0.27 14.77 8.31 -92.70 -0.77 13.99 14 21 H 0.04 2.38 8.07 -2.38 -0.02 2.36 14 22 H 0.04 2.22 7.96 -2.39 -0.02 2.20 14 23 H 0.23 3.14 8.06 -2.91 -0.02 3.12 14 24 H 0.27 2.67 8.06 -2.91 -0.02 2.65 14 Total: -1.00 -69.42 235.16 4.59 -64.83 By element: Atomic # 1 Polarization: -6.63 SS G_CDS: 1.24 Total: -5.39 kcal Atomic # 6 Polarization: 41.38 SS G_CDS: 7.10 Total: 48.48 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -5.64 Total: -108.96 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -0.14 Total: -44.54 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -69.42 4.59 -64.83 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260838204.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.218 kcal (2) G-P(sol) polarization free energy of solvation -69.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds