Wall clock time and date at job start Mon Mar 30 2020 02:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36738 * 125.10735 * 2 1 4 4 C 1.34024 * 109.37056 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.55014 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.46869 * 265.02114 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48501 * 109.47188 * 90.00793 * 10 8 6 12 12 H 1.48501 * 109.47085 * 210.00372 * 10 8 6 13 13 H 1.48498 * 109.47634 * 330.00608 * 10 8 6 14 14 C 1.47717 * 106.89294 * 0.26302 * 4 3 2 15 15 C 1.45218 * 141.47053 * 179.71147 * 14 4 3 16 16 C 1.32084 * 114.56026 * 180.02562 * 15 14 4 17 17 S 1.75390 * 111.04581 * 359.57317 * 16 15 14 18 18 C 1.37461 * 106.00800 * 359.56764 * 14 4 3 19 19 H 1.09003 * 109.47090 * 90.02458 * 1 2 3 20 20 H 1.09001 * 109.47087 * 210.02028 * 1 2 3 21 21 H 1.08998 * 109.47815 * 330.02705 * 1 2 3 22 22 H 1.07999 * 125.31536 * 359.97438 * 3 2 1 23 23 H 1.09004 * 109.47210 * 145.02407 * 5 4 3 24 24 H 1.08994 * 109.47551 * 25.02060 * 5 4 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 26 26 H 1.07999 * 122.71752 * 359.97438 * 15 14 4 27 27 H 1.08004 * 124.47230 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2513 1.1186 0.0000 4 6 3.5413 0.7551 0.0006 5 6 4.7335 1.6770 0.0013 6 6 5.2070 1.8869 -1.4139 7 1 4.6955 1.4017 -2.2321 8 6 6.2893 2.7034 -1.6648 9 7 6.9119 3.2946 -0.6685 10 14 6.8714 2.9697 -3.4197 11 1 6.1683 4.1410 -4.0021 12 1 8.3353 3.2193 -3.4231 13 1 6.5734 1.7609 -4.2290 14 6 3.5711 -0.7217 -0.0055 15 6 4.4985 -1.8392 -0.0132 16 6 3.9246 -3.0289 -0.0166 17 16 2.1767 -2.8850 0.0016 18 6 2.2578 -1.1274 0.0006 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5134 22 1 1.8894 2.1362 -0.0004 23 1 5.5358 1.2330 0.5907 24 1 4.4512 2.6358 0.4359 25 1 7.6736 3.8687 -0.8450 26 1 5.5705 -1.7082 -0.0168 27 1 4.4609 -3.9663 -0.0220 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260873666.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:42 Heat of formation + Delta-G solvation = 49.500993 kcal Electronic energy + Delta-G solvation = -12339.888491 eV Core-core repulsion = 10189.320021 eV Total energy + Delta-G solvation = -2150.568471 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.71361 -36.43020 -35.49796 -33.28428 -30.51609 -28.64955 -26.72908 -24.62831 -23.19367 -21.22598 -19.99520 -18.48373 -18.04465 -16.43877 -16.20671 -16.01669 -15.45922 -15.22816 -14.39949 -14.06582 -13.90984 -13.63366 -13.31401 -12.89398 -12.78762 -12.47310 -12.34506 -12.11650 -11.78431 -11.50990 -11.46948 -10.55906 -9.81408 -8.91001 -8.38221 -8.06249 -6.27495 0.32118 0.51218 1.14632 1.33194 1.40501 1.41117 1.52933 2.20688 2.27658 2.48157 3.14336 3.92882 4.00345 4.21473 4.41561 4.48078 4.63866 4.76993 4.86735 4.97282 5.31004 5.38202 5.46166 5.61404 5.79497 5.93043 6.21193 6.26860 6.46666 6.84239 7.40294 8.93924 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.034425 B = 0.008139 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.162789 B = 3439.352785 C = 3828.929910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.443 5.443 3 C 0.005 3.995 4 C -0.125 4.125 5 C 0.093 3.907 6 C -0.521 4.521 7 H 0.046 0.954 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.269 1.269 12 H -0.278 1.278 13 H -0.271 1.271 14 C -0.194 4.194 15 C -0.093 4.093 16 C -0.223 4.223 17 S 0.157 5.843 18 C -0.048 4.048 19 H 0.080 0.920 20 H 0.092 0.908 21 H 0.106 0.894 22 H 0.186 0.814 23 H -0.007 1.007 24 H 0.006 0.994 25 H 0.265 0.735 26 H 0.130 0.870 27 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.627 -10.558 1.030 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.125 5.125 3 C -0.122 4.122 4 C -0.133 4.133 5 C 0.056 3.944 6 C -0.559 4.559 7 H 0.065 0.935 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.194 1.194 12 H -0.204 1.204 13 H -0.195 1.195 14 C -0.207 4.207 15 C -0.124 4.124 16 C -0.357 4.357 17 S 0.409 5.591 18 C -0.272 4.272 19 H 0.099 0.901 20 H 0.110 0.890 21 H 0.124 0.876 22 H 0.203 0.797 23 H 0.011 0.989 24 H 0.024 0.976 25 H 0.074 0.926 26 H 0.147 0.853 27 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -14.010 -11.427 1.084 18.111 hybrid contribution 1.945 1.605 -0.686 2.613 sum -12.065 -9.821 0.398 15.562 Atomic orbital electron populations 1.22302 0.74462 1.05806 1.04260 1.43458 1.06782 1.01841 1.60469 1.21621 0.89116 0.91457 1.09976 1.20906 0.95209 0.91287 1.05892 1.17375 0.89702 0.91658 0.95713 1.21371 1.13711 1.27751 0.93043 0.93550 1.25890 0.96467 0.95361 1.01568 1.70085 1.22057 1.32043 1.33024 0.85474 0.77536 0.78677 0.79519 1.19443 1.20372 1.19530 1.20708 0.92216 0.94124 1.13679 1.20471 0.99894 0.90722 1.01303 1.25171 0.96437 1.01489 1.12577 1.82924 1.04451 0.90201 1.81562 1.23606 0.93400 0.95345 1.14831 0.90103 0.88973 0.87558 0.79691 0.98877 0.97580 0.92645 0.85252 0.78449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 11.09 127.77 1.42 2.88 15 2 N -0.44 -14.81 3.18 -541.71 -1.72 -16.54 15 3 C 0.01 0.21 11.24 82.97 0.93 1.14 15 4 C -0.12 -6.07 5.54 -18.32 -0.10 -6.17 15 5 C 0.09 5.32 5.51 29.10 0.16 5.48 15 6 C -0.52 -31.30 9.09 25.60 0.23 -31.07 15 7 H 0.05 2.80 7.74 -2.91 -0.02 2.78 15 8 C 0.00 0.28 5.46 84.66 0.46 0.74 15 9 N -0.93 -57.66 13.29 21.45 0.28 -57.37 15 10 Si 0.96 45.73 29.54 68.60 2.03 47.76 15 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 13 H -0.27 -12.59 7.11 99.48 0.71 -11.88 15 14 C -0.19 -8.62 7.01 -19.16 -0.13 -8.75 15 15 C -0.09 -3.64 10.42 23.11 0.24 -3.40 15 16 C -0.22 -6.62 11.06 66.86 0.74 -5.88 15 17 S 0.16 4.31 23.25 -56.49 -1.31 3.00 15 18 C -0.05 -1.77 7.91 83.57 0.66 -1.10 15 19 H 0.08 1.45 8.14 -2.39 -0.02 1.43 15 20 H 0.09 1.55 8.14 -2.39 -0.02 1.53 15 21 H 0.11 1.68 8.14 -2.39 -0.02 1.66 15 22 H 0.19 6.31 8.06 -2.91 -0.02 6.28 15 23 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 15 24 H 0.01 0.35 8.14 -2.39 -0.02 0.33 15 25 H 0.26 15.29 8.31 -92.70 -0.77 14.52 15 26 H 0.13 5.11 8.06 -2.91 -0.02 5.09 15 27 H 0.20 4.22 8.06 -2.91 -0.02 4.20 15 Total: -1.00 -72.38 255.83 5.04 -67.34 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: 1.16 Total: 1.94 kcal Atomic # 6 Polarization: -50.74 SS G_CDS: 4.61 Total: -46.13 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -1.44 Total: -73.91 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.31 Total: 3.00 kcal Total: -72.38 5.04 -67.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260873666.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.839 kcal (2) G-P(sol) polarization free energy of solvation -72.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds