Wall clock time and date at job start Mon Mar 30 2020 02:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00186 * 2 1 4 4 H 1.48497 * 109.47265 * 269.99934 * 3 2 1 5 5 H 1.48501 * 109.47222 * 30.00428 * 3 2 1 6 6 H 1.48504 * 109.46990 * 149.99924 * 3 2 1 7 7 C 1.37878 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99618 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46931 * 179.97438 * 9 7 2 11 11 N 1.30516 * 126.34969 * 269.95439 * 10 9 7 12 12 N 1.28597 * 109.67623 * 180.02562 * 11 10 9 13 13 C 1.30525 * 109.66994 * 359.72278 * 12 11 10 14 14 N 1.35494 * 107.30780 * 0.43869 * 13 12 11 15 15 C 1.46496 * 126.98181 * 179.83633 * 14 13 12 16 16 F 1.39905 * 109.47025 * 359.68564 * 15 14 13 17 17 F 1.39900 * 109.47180 * 239.68932 * 15 14 13 18 18 F 1.39897 * 109.47384 * 119.68543 * 15 14 13 19 19 H 0.97001 * 119.99461 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.47253 * 59.99762 * 9 7 2 21 21 H 1.09000 * 109.46672 * 299.99762 * 9 7 2 22 22 H 1.07996 * 126.34635 * 180.29716 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2302 -3.6446 0.0005 11 7 2.7323 -4.2331 -1.0507 12 7 3.5326 -5.1697 -0.6817 13 6 3.5820 -5.2172 0.6218 14 7 2.7522 -4.2548 1.0920 15 6 2.4797 -3.9347 2.4953 16 9 3.2139 -4.7934 3.3205 17 9 1.1141 -4.0946 2.7534 18 9 2.8510 -2.6106 2.7523 19 1 -0.4849 0.8401 0.0004 20 1 0.6246 -2.5570 -0.8896 21 1 0.6240 -2.5566 0.8903 22 1 4.1728 -5.8990 1.2154 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261023424.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:37 Heat of formation + Delta-G solvation = -63.917850 kcal Electronic energy + Delta-G solvation = -15340.682248 eV Core-core repulsion = 12097.045613 eV Total energy + Delta-G solvation = -3243.636635 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.047 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.26937 -48.00259 -47.74265 -42.74479 -34.36531 -33.54368 -31.20549 -27.87492 -26.09873 -23.65907 -22.22628 -21.04106 -18.88401 -18.82430 -18.22921 -16.68863 -15.33947 -15.23273 -14.75759 -14.69838 -14.56996 -14.26851 -14.10369 -13.93033 -13.90502 -13.03363 -12.39039 -11.78908 -11.25490 -10.94363 -10.85803 -10.76378 -10.24472 -9.99553 -9.81656 -8.66847 -8.60896 -6.24084 -4.30050 1.50836 1.93147 2.98084 3.23903 3.24064 3.30575 3.35458 3.70853 4.21269 4.31485 4.54913 4.96744 5.12031 5.56468 5.79855 6.38769 6.82245 7.06400 7.21675 7.68994 7.93779 8.70712 9.03398 9.35447 10.86154 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.032356 B = 0.011253 C = 0.009837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.165793 B = 2487.714666 C = 2845.715763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.086 3.914 10 C 0.269 3.731 11 N -0.303 5.303 12 N -0.283 5.283 13 C 0.140 3.860 14 N -0.543 5.543 15 C 0.680 3.320 16 F -0.156 7.156 17 F -0.148 7.148 18 F -0.132 7.132 19 H 0.267 0.733 20 H 0.067 0.933 21 H 0.044 0.956 22 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 -7.112 7.458 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C 0.047 3.953 10 C 0.005 3.995 11 N -0.139 5.139 12 N -0.118 5.118 13 C -0.146 4.146 14 N -0.252 5.252 15 C 0.542 3.458 16 F -0.138 7.138 17 F -0.129 7.129 18 F -0.114 7.114 19 H 0.077 0.923 20 H 0.085 0.915 21 H 0.062 0.938 22 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.117 -7.354 5.996 10.343 hybrid contribution 0.260 1.131 1.663 2.027 sum 4.377 -6.224 7.658 10.796 Atomic orbital electron populations 1.69928 1.06038 1.27515 1.48982 1.24922 0.94943 0.99400 0.94347 0.86399 0.79711 0.82386 0.78471 1.20229 1.20909 1.19712 1.20775 0.93066 0.88889 1.53219 0.92206 1.18207 0.90474 0.85850 1.00809 1.26660 0.97157 0.96260 0.79416 1.74414 1.10445 1.06261 1.22766 1.74217 1.14934 1.14680 1.07932 1.26390 0.98680 0.95719 0.93800 1.47675 1.39513 1.31712 1.06323 1.17752 0.75087 0.75538 0.77388 1.93251 1.77568 1.70769 1.72171 1.93322 1.30841 1.95272 1.93493 1.93419 1.91024 1.33612 1.93308 0.92326 0.91530 0.93773 0.76219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.78 13.29 55.43 0.74 -24.05 14 2 C 0.07 1.81 5.46 -17.82 -0.10 1.72 14 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 14 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 14 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 14 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 14 7 C -0.52 -13.97 9.09 -34.44 -0.31 -14.29 14 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 14 9 C 0.09 2.12 5.33 -29.03 -0.15 1.97 14 10 C 0.27 6.01 7.16 -154.98 -1.11 4.90 14 11 N -0.30 -7.00 12.21 32.80 0.40 -6.59 14 12 N -0.28 -5.72 12.21 29.69 0.36 -5.36 14 13 C 0.14 2.31 12.20 -89.94 -1.10 1.21 14 14 N -0.54 -10.04 3.00 -120.24 -0.36 -10.40 14 15 C 0.68 11.04 3.61 59.84 0.22 11.26 14 16 F -0.16 -2.01 16.73 2.25 0.04 -1.97 14 17 F -0.15 -2.43 16.67 2.25 0.04 -2.40 14 18 F -0.13 -2.41 17.48 2.25 0.04 -2.37 14 19 H 0.27 7.04 8.31 -40.82 -0.34 6.70 14 20 H 0.07 1.74 8.14 -51.93 -0.42 1.32 14 21 H 0.04 1.10 7.19 -51.93 -0.37 0.72 14 22 H 0.22 2.41 7.95 -52.49 -0.42 1.99 14 LS Contribution 224.63 15.07 3.39 3.39 Total: -1.00 -29.29 224.63 -3.69 -32.99 By element: Atomic # 1 Polarization: -5.12 SS G_CDS: -0.75 Total: -5.87 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -2.56 Total: 6.77 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 1.14 Total: -46.40 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.11 Total: -6.73 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -29.29 -3.69 -32.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023424.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.931 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds